PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G006500.2
Common NameB456_001G006500, LOC105786665
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 622aa    MW: 66596.6 Da    PI: 8.1092
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G006500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.23.9e-14122160241
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C N+ +
  Gorai.001G006500.2 122 KQKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCYNNVD 160
                         89**************************.********986 PP
2TCR50.83.3e-16206245140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Gorai.001G006500.2 206 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 245
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-15121161IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.939122246IPR005172CRC domain
PfamPF036389.0E-11123158IPR005172CRC domain
SMARTSM011148.4E-20206247IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12209244IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MGKEEGGGEI PPKMVQSDTA DFPSKKLARQ LDFTAGFGGV SSGSVNLPEH PQSTQRIGVA  60
SPSAAVTVQQ QQIKPPTVVA AAVPVVAAQH PPLTTASTRV VKPESPKAKP RPNELKDGTP  120
KKQKQCNCKH SRCLKLYCEC FASGTYCDGC NCVNCYNNVD NEAARRDAIE ATLERNPNAF  180
RPKIASSPHG ARDSREEAGE VLMLAKHNKG CHCKKSGCLK KYCECFQANI LCSENCKCMD  240
CKNFEGSEER QALFHGDHAN NMAYIQQAAN AAITGAIGSS GYASTPVSKK RKVQDLFFGS  300
TAKDPSVHRL GNFPQPHHIR ASAPASSLSS VPASRAGTTA AVGPSKFTYR SLLADIIQKQ  360
DLKELCSVLV VLSGEVAKTL SDQRILTDKR AEDHAETSIA SSTQDRLQNQ KDSDAEKTTA  420
DDCSSANQAD KAGPEESSSD GADMPKGRPM SPGTLALMCD EQDTMFMASA SPNRIMGHGC  480
STSSQLPYEQ GMTEIYAEQE RIVLTKFRDC LNRLITFGEI KETQCSSLAR TEIGSQRVHP  540
SNGTETVRTE TRNQQGSTTN GVAKNASPPT VKTSPMTASV ITASNNDLPR GPSHPENGDA  600
KSKSEKTDVK TINAADNRPK V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-321142552132Protein lin-54 homolog
5fd3_B3e-321142552132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468645.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0D2QIX50.0A0A0D2QIX5_GOSRA; Uncharacterized protein
STRINGGorai.001G006500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]