PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G004200.2
Common NameB456_001G004200, LOC105781587
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 324aa    MW: 38025.5 Da    PI: 4.1866
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G004200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.52.2e-1074156486
            trihelix   4 kqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         ++e+ +L+e+  ++  +l+r++l++ +W ++++k+  + +  ++  qC+  ++ l++++kk+k  +++    +ss++++f+++e
  Gorai.001G004200.2  74 QKEIYVLLEVWGNRFLQLGRRSLRGEDWVDIAEKVsDALKSMKNEAQCRRMIDGLKRKFKKEKSKAERM-GLNSSKWVFFRKME 156
                         689********************************77889999*********************99986.89999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-1374157No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDGVEPYSFN RHPQYPRSTR TRHVYSYGPD EELDDEEEME LDNEDVDDDN DDDPDVYYHR  60
VKESERFERY PKRQKEIYVL LEVWGNRFLQ LGRRSLRGED WVDIAEKVSD ALKSMKNEAQ  120
CRRMIDGLKR KFKKEKSKAE RMGLNSSKWV FFRKMEMLMG LGSSSFRQQE SWLACGVDSG  180
EFVFMNPQVY LDRSNGFDEM RDSPAESEID DDDDDGEEAD GGSMKVDVND ERSLRMLADS  240
VQRFGKIYEK IESSKREHMK ELEKMRMDFQ KELEVQKQQI LERAQAEIAK MKEEDDDDDD  300
DDDETDDDDD GNDNGDSTEN ISE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9645521e-117JX964552.1 Gossypium hirsutum clone NBRI_TRANS-821 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462526.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A0D2PSE40.0A0A0D2PSE4_GOSRA; Uncharacterized protein
STRINGGorai.001G004200.11e-167(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-76Trihelix family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]