PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G004200.2

Common Name

B456_001G004200, LOC105781587

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 324aa MW: 38025.5 Da PI: 4.1866

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G004200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.5	2.2e-10	74	156	4	86
trihelix 4 kqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++e+ +L+e+ ++ +l+r++l++ +W ++++k+ + + ++ qC+ ++ l++++kk+k +++ +ss++++f+++e Gorai.001G004200.2 74 QKEIYVLLEVWGNRFLQLGRRSLRGEDWVDIAEKVsDALKSMKNEAQCRRMIDGLKRKFKKEKSKAERM-GLNSSKWVFFRKME 156 689******************************77889999*****************99986.89999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.9E-13	74	157	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MDGVEPYSFN RHPQYPRSTR TRHVYSYGPD EELDDEEEME LDNEDVDDDN DDDPDVYYHR 60 VKESERFERY PKRQKEIYVL LEVWGNRFLQ LGRRSLRGED WVDIAEKVSD ALKSMKNEAQ 120 CRRMIDGLKR KFKKEKSKAE RMGLNSSKWV FFRKMEMLMG LGSSSFRQQE SWLACGVDSG 180 EFVFMNPQVY LDRSNGFDEM RDSPAESEID DDDDDGEEAD GGSMKVDVND ERSLRMLADS 240 VQRFGKIYEK IESSKREHMK ELEKMRMDFQ KELEVQKQQI LERAQAEIAK MKEEDDDDDD 300 DDDETDDDDD GNDNGDSTEN ISE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964552	1e-117	JX964552.1 Gossypium hirsutum clone NBRI_TRANS-821 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462526.1	0.0	PREDICTED: trihelix transcription factor ASIL2 isoform X2
TrEMBL	A0A0D2PSE4	0.0	A0A0D2PSE4_GOSRA; Uncharacterized protein
STRING	Gorai.001G004200.1	1e-167	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-76	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G004200.2
Entrez Gene	105781587

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]