PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G004200.1

Common Name

B456_001G004200, LOC105781587

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 351aa MW: 41217.9 Da PI: 4.2273

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G004200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.9	1.1e-12	99	183	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ +L+e+ ++ +l+r++l++ +W ++++k+ + + ++ qC+ ++ l++++kk+k +++ +ss++++f+++e Gorai.001G004200.1 99 WTQQEIYVLLEVWGNRFLQLGRRSLRGEDWVDIAEKVsDALKSMKNEAQCRRMIDGLKRKFKKEKSKAERM-GLNSSKWVFFRKME 183 ***********************************77889999*****************99986.89999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.3E-15	98	184	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MDGVEPYSFN RHPQYPRSTR TRHVYSYGPD EELDDEEEME LDNEDVDDDN DDDPDVYYHR 60 VKESERFERY PKRQKVRTSV PSFQYAPDHR DSLKNAYDWT QQEIYVLLEV WGNRFLQLGR 120 RSLRGEDWVD IAEKVSDALK SMKNEAQCRR MIDGLKRKFK KEKSKAERMG LNSSKWVFFR 180 KMEMLMGLGS SSFRQQESWL ACGVDSGEFV FMNPQVYLDR SNGFDEMRDS PAESEIDDDD 240 DDGEEADGGS MKVDVNDERS LRMLADSVQR FGKIYEKIES SKREHMKELE KMRMDFQKEL 300 EVQKQQILER AQAEIAKMKE EDDDDDDDDD ETDDDDDGND NGDSTENISE *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MDGVEPYSFN RHPQYPRSTR TRHVYSYGPD EELDDEEEME LDNEDVDDDN DDDPDVYYHR  60
VKESERFERY PKRQKVRTSV PSFQYAPDHR DSLKNAYDWT QQEIYVLLEV WGNRFLQLGR  120
RSLRGEDWVD IAEKVSDALK SMKNEAQCRR MIDGLKRKFK KEKSKAERMG LNSSKWVFFR  180
KMEMLMGLGS SSFRQQESWL ACGVDSGEFV FMNPQVYLDR SNGFDEMRDS PAESEIDDDD  240
DDGEEADGGS MKVDVNDERS LRMLADSVQR FGKIYEKIES SKREHMKELE KMRMDFQKEL  300
EVQKQQILER AQAEIAKMKE EDDDDDDDDD ETDDDDDGND NGDSTENISE *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964552	1e-117	JX964552.1 Gossypium hirsutum clone NBRI_TRANS-821 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461812.1	0.0	PREDICTED: trihelix transcription factor ASIL2 isoform X1
TrEMBL	A0A0D2LS69	0.0	A0A0D2LS69_GOSRA; Uncharacterized protein
STRING	Gorai.001G004200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-84	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G004200.1
Entrez Gene	105781587

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]