PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G002800.1 | ||||||||
Common Name | B456_001G002800, LOC105769604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 442aa MW: 48705.2 Da PI: 7.2517 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.7 | 2e-31 | 233 | 288 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Gorai.001G002800.1 233 KARRCWSPHLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 288 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.103 | 230 | 290 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 231 | 291 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.1E-16 | 231 | 291 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-26 | 233 | 288 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.2E-6 | 235 | 286 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MASSSSSELT LDCKPHGHFA APSKCYADQQ QIVVVNHTLK LEDYLSRLEE ERLKIDAFKR 60 ELPLCMQLLT NALESSRQQL QAYRANQGPK PVLEEFMPLK TSVSENMDKF QTISDHKANW 120 MTTAQLWSQA GHYETKPQSS SITTSSPKDT DIGLNVVSPK LGSSLDSKQR IGGAFLPFSK 180 DRNSCSTALP DLSLASSDTE NGTSCQQRDD GTSNNRTDGQ TTNGSNTNQP HRKARRCWSP 240 HLHRRFVNAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPIPQAAG 300 APTPQLVVLG GIWVPPEYAT AAHSGDPALY GAHHHHHPAV PHAPPHFCAS PVPQEFYTTA 360 ATPALPPPHH TFHHQLHNMY NARNSPEPDV REAGDRSESI EDGKSESGSW KGESCGDQRI 420 GLAALREEGE ESNRSEITLK F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-13 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-13 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-13 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-13 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-13 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-13 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-13 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-13 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}. | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615064 | 0.0 | JX615064.1 Gossypium hirsutum clone NBRI_GE58863 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012446204.1 | 0.0 | PREDICTED: probable transcription factor GLK2 | ||||
Swissprot | Q9ZQ85 | 1e-122 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | A0A0D2PJX0 | 0.0 | A0A0D2PJX0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G002800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7134 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-116 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G002800.1 |
Entrez Gene | 105769604 |
Publications ? help Back to Top | |||
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