PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KXZ57088.1 | ||||||||
Common Name | MID | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 164aa MW: 18478.5 Da PI: 9.3079 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 84.4 | 1.1e-26 | 109 | 159 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++ d+s+yF+lpik+A+k+Lg+++T+LKriCRq+GI+RWP+Rk++sl KXZ57088.1 109 KADLTSADISSYFHLPIKEASKCLGISTTYLKRICRQLGIPRWPYRKVASL 159 6899********************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.485 | 90 | 164 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.3E-23 | 112 | 159 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
MTISVLRRDA TCNGCSVYKT YVFNNPRVGR LTLDLHQNGN NFHAHILGSG SDVPLFEICC 60 ELKNGRSTEW LKDCMDAFLK QIICEGYRLE KGKEKPPSAV PLAKVLARKA DLTSADISSY 120 FHLPIKEASK CLGISTTYLK RICRQLGIPR WPYRKVASLD LSDR |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB353340 | 1e-100 | AB353340.1 Gonium pectorale MID gene for minus dominance protein, complete cds. | |||
GenBank | LC062718 | 1e-100 | LC062718.1 Gonium pectorale DNA, mating type locus, mating_type: minus. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A9ZPM3 | 1e-119 | A9ZPM3_GONPE; MID minus dominance-like protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP84 | 16 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35590.1 | 2e-13 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
---|---|---|---|
|