PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ56598.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 1007aa    MW: 95725.2 Da    PI: 8.1742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ56598.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.2e-13702727126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykte Cr + +tG C+yG++C+FaHg
  KXZ56598.1 702 YKTEMCRSWTETGSCRYGSKCQFAHG 727
                 9************************9 PP
2zf-CCCH36.58.2e-12740764125
                 --S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                 ykte Cr++a+tG C+yG+rC+F+H
  KXZ56598.1 740 YKTEHCRTYAATGACQYGNRCRFIH 764
                 9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.5E-19697733IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-10700733IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.69701729IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7701728IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9702727IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-12734765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-8736765IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981739767IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6739766IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8740764IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1007 aa     Download sequence    Send to blast
MDVSDAPRFA LPEATEPEHY KPRDVKSSSQ DALAESISLR PSWSRAVSRP GAAPTTPTQQ  60
QRVMQRLSTD GADQQQQQQP QHLDSGFLSR RSTDSSDGRA ASDMQVGASG TPSPVAPASG  120
GAAALPRPAS QSFAIPANAS ALSSGSGLGG SGVGQQLFGS TCLMPQFRGV SGRSSFGTDG  180
GAAPLANRAG AGAISLQPGS PLGSGRASPT HGGAFGVTVG GGGASDGDGN ASYMSASSDG  240
SPTAVIPSVR SPFRASVGAA PTDAAAAAAA AAAALMPPPQ PRQPGASAGG GAAAGASGGG  300
GGPTGLGNGV YLVVDPNTLR VVGTAHATGT NTPGSIAPST PGGIAFATPS GCGGGHTPIT  360
GSARSSMDMP TSPLAASGAS CPADITRAAL SFLGGGAGGG AGGGGSAPPS VVNAATAAAV  420
SHQNAMALAS LSAAAAAAES ASAAGGGATQ PTLDELLMLL AASGGAGAGG PGPGGGMATA  480
GTSPAAALAS SLDPATAAML LNEGLTAGGL SDDVALALAR AAGVFDGNGS GVGGGAAGAA  540
PALDATAANA ALTAGLQLPL PIPVPVPVGA PPAATGAVRP SPPPGFGGSM LPTPMSPGIF  600
STSAATSGRG LPSFASTGPL GGAGGLGGLG SPGPMRGSEA PSWRTANGLG GLSLAGSPGA  660
AAAALGARTT QAAAALAPQG LLAGLASPPG PRGTGPKHNT LYKTEMCRSW TETGSCRYGS  720
KCQFAHGTEE LRPIIRHPKY KTEHCRTYAA TGACQYGNRC RFIHAAPPGA AFGTPRPGGP  780
GVGGEGGLGG LAALEEHGGG EGLGAGLWAR AGEPGGIQGL PAAAASLLSP TRLSLFSPTG  840
RGGARHSALL TSPPYKMARN GLASAAAAGG GGASGSGSDP NSDPLPAPLP MPPSLGLDQP  900
GGGGGATRTA SGVGSGLALL EGAGGAGSGG GSSGVDAALQ LFSAFGAFKP NGNGNGVAPV  960
LKRGREESGA QVLRREEAQL QPQPKLQQAQ QQHDTDAVME ERATATA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-27699766168Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150H4440.0A0A150H444_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-24C3H family protein