PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ56411.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family NF-X1
Protein Properties Length: 907aa    MW: 94860.7 Da    PI: 8.182
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ56411.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.12.4e-05268285119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG H+C   CH+G+C +C+
  KXZ56411.1 268 CG-HRCPDMCHPGDCASCR 285
                 **.***************6 PP
2zf-NF-X121.74.4e-07320338119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C++ CH GpC++Cp
  KXZ56411.1 320 CGNHTCEQVCHAGPCGECP 338
                 ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS013590101170IPR019786Zinc finger, PHD-type, conserved site
PfamPF014220.068208233IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0072216234IPR000967Zinc finger, NF-X1-type
CDDcd060085.94E-8258305No hitNo description
PfamPF014220.0087268285IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0086268286IPR000967Zinc finger, NF-X1-type
CDDcd060089.00E-11310359No hitNo description
PfamPF014225.4E-6320338IPR000967Zinc finger, NF-X1-type
SMARTSM004389.8E-5320339IPR000967Zinc finger, NF-X1-type
CDDcd060085.01E-9364413No hitNo description
PfamPF014220.12374393IPR000967Zinc finger, NF-X1-type
SMARTSM0043835374402IPR000967Zinc finger, NF-X1-type
PfamPF014220.0076427444IPR000967Zinc finger, NF-X1-type
SMARTSM004380.019427446IPR000967Zinc finger, NF-X1-type
PfamPF0142218451461IPR000967Zinc finger, NF-X1-type
PfamPF014220.51595605IPR000967Zinc finger, NF-X1-type
SMARTSM0043880595635IPR000967Zinc finger, NF-X1-type
SMARTSM004385648666IPR000967Zinc finger, NF-X1-type
PfamPF014224.4649664IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MPRVGGNGPL RRPMGGPGPV LSNHSSDDEF AAGGPPASAW ARGAPKTGAD QAESDQASSA  60
LFEGYLQAGR VLGDDLGKDQ VFQQGLSRIR DHLANMDGSC CLICLNHIRP TEAIWHCGRG  120
CYTVLHLVCI QDWARSQLDA AAAKAAARLS QFPAAADEAR ATAEWGCPKC RSTYPAADIP  180
RQYKCFCEKV ENPEFDPWVT PHSCGEICGR PLPGGCEHTC LLLCHPGPCP PCPLVVDASC  240
YCGRKQHKRR CGHHEYSCEG VCGAQLECGH RCPDMCHPGD CASCRVMGDF ACRCGAERRR  300
RPCGERAYQC GRVCGKALSC GNHTCEQVCH AGPCGECPFS GARSCPCGKV THEGMSCTDK  360
VPTCGATCGK LLPCGVHRCN DRCHHGECTT QCRGPALKTC RCGKSQKEVL CFQEHTCERR  420
CMAMRACGRH PCKRRCCDGN CPPCEELPPH RCHFGPCPPC PKPCATPLTC GHACAEPSCH  480
DPPPPAVPDF VQPPPPKAKA AGSAATSERS RAKRDGGGSG GADGLDGAPA VWQPSILAAQ  540
MLAGVAATGE LPSACPPCRQ PVPLGCVGGH TQRALPCCEV RPFSCGAACG RPLACGNHTC  600
GMPCHAVADA PGAPGAAPVA APGPADVAAP RACRQCSRRC ERPRPAGCTH PCPLACHQGP  660
CPRCEAQVRA GCLCGKSTLQ LSCHQMVAVT ATAGAGKQAT VASALSCGKP CHKQLLYCTH  720
PCNPEDCSAE VNVRCSCPAK RRAKWRCAEV QAALVKAGKP RTYDDSQAPR LLPCDAECER  780
AKAKSSTASL AAASGSASAS KGAGEDKRSG SAGATVSASP STDNLPDAAA AVGGGKGGKA  840
RLTRAEREAL AAKKEAERRR QERMSGIVRG VVLGVLGVVG VLLALGARAA LLWLDAYMRD  900
KYGKVQL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002954040.10.0hypothetical protein VOLCADRAFT_82592
TrEMBLA0A150H2W10.0A0A150H2W1_GONPE; Uncharacterized protein
STRINGXP_002954040.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP530277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.16e-94sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors