PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ56291.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family E2F/DP
Protein Properties Length: 702aa    MW: 73283.1 Da    PI: 8.3242
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ56291.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.51.7e-26145223371
     E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 +k+Lr++++k   ++ek+e+  ++t+neva+eLv+e             d+kn+rRR+YD++NVL+a+n+i+k ek+ei+wkg
  KXZ56291.1 145 NKGLRHFSMK---VCEKVEAkVRTTYNEVADELVEEmgkieaankngqyDEKNIRRRVYDAINVLMAMNIIQK-EKKEITWKG 223
                 69********...*******999**************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-41140226IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-30143223IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.7E-24145223IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-19146224IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011386.4E-24230351IPR014889Transcription factor DP, C-terminal
CDDcd144581.32E-27233319IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.75E-23237329No hitNo description
PfamPF087811.5E-19237320IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MEEAHQPKAE PTEPGQPGSL GMGHYVQDLQ EAGLLEFATE VDFNRLAETP VAGGLPLPRP  60
SPVGFNNPPP QPTLPMDLHQ CHMANQASDL ATARAAQVLH LARVSLHKLN TSYNPRATGS  120
GGTDNSSKRR KTSRGPDTSG SRSGNKGLRH FSMKVCEKVE AKVRTTYNEV ADELVEEMGK  180
IEAANKNGQY DEKNIRRRVY DAINVLMAMN IIQKEKKEIT WKGFPKLGNS AVERLRAERQ  240
AKIKEDMIEQ QQALKRLLDR SSQRGHQGGT QLFLPFILVQ AKPEATVEVK ISEDLMDVQF  300
EFGNNPFQIH DDSHVLKKMA EHQVRQPPQP PFPVAGGLVL APWQQPNGAA GPFLARDPLT  360
DAATLQLAVA AAHAQGNALA YGYPPAVMYQ QQQQLLQQQQ QQQQQQQAGQ AAVQPGQAVG  420
AGGAQGQPVA LQPGGQPGQQ APNGAVAAQA QGGAEAGAGP GAAPGTTAGQ APAPTQQQLQ  480
QLHALQVQIQ HQQQLQAHLQ MQHHVRAGLP PLALPPLGAP LGHGGGPPHF SLPHPHPLHT  540
GPPPPQPGQM QSLPVPAPLL PPTLQANGMA GPPRLGLPQL PPLQQAGQLP AGLMPMPQIP  600
ANLAAALSTA AAPPAPAAAP PPQQPAQAAA AAAAVPPPAA GQGSAPLTHA GGGAAPPAPG  660
PEVNGNSSSL VGLAAQSQPP THGLPMAQLV VAAPAAAFPL VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-30140231594PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001700867.11e-135DP1 transcription factor
TrEMBLA0A150H2I90.0A0A150H2I9_GONPE; DP1 protein
STRINGEDP071211e-135(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-56Transcription factor DP