PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ56109.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family HB-other
Protein Properties Length: 948aa    MW: 98189 Da    PI: 7.76
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ56109.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.29e-068899202354
                 SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 +yp ++ +++L +  gL+ +q+ +WF N+R +
  KXZ56109.1 889 PYPGEDVKRQLGAAAGLNATQINNWFINQRKR 920
                 8*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517356.09E-3760239IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7205.9E-5261210IPR016040NAD(P)-binding domain
PfamPF001062.1E-864110IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000813.4E-56582IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7205.9E-52276349IPR016040NAD(P)-binding domain
SuperFamilySSF517356.09E-37307354IPR016040NAD(P)-binding domain
PRINTSPR000813.4E-5332349IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.7205.9E-52382413IPR016040NAD(P)-binding domain
SuperFamilySSF517356.09E-37382414IPR016040NAD(P)-binding domain
PROSITE profilePS512138.748841861IPR005539ELK domain
PROSITE profilePS5007110.641861924IPR001356Homeobox domain
SuperFamilySSF466893.38E-14862926IPR009057Homeodomain-like
SMARTSM003899.2E-8863928IPR001356Homeobox domain
CDDcd000869.80E-10864924No hitNo description
Gene3DG3DSA:1.10.10.601.6E-21868924IPR009057Homeodomain-like
PfamPF059202.6E-13881920IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 948 aa     Download sequence    Send to blast
MDAASATTIP RTTGGSLSAT PPLLRLMHTA LDGTVESFVN IYDNLAERLS IKPRATFSED  60
LSGKVAIVTG GNAGIGFATA QQLARRGAHV VIACRDAGRA EAAVQAIARS SPASSSTSSS  120
SSSSPSPPAP PPRVEAMPLD LGRLASVRAF AEAWRNRGLP LHLLVCNAGV MGPPKRLETA  180
DGLEMQFQVN FLSHWLLANL LLGSERERRK ALTAAPPPRT AAAATSATAG AGGAASKPAS  240
ATAAPLALSL HAFAGGAGVG AAGAAVPAGG EEEATRVVMV TSLTHRAGPL QWADKQSLHS  300
YEPFLSYGLS KLANILTAKE LQRRFDRSRG LGRDTAVAVH PGLVSTDLAN GFFRGVSTGW  360
AAGTPLQPLV EGAVRGASHV IGPLLMRSPE QSAAVMLHAC LAPPAAVAGR YLALGRPAQP  420
DQAGPAGLPR FPNAALWAQQ QYESSPQSQP HPSHLPMYGA LGPGACYAPS AASNASAFAA  480
AGCAAGAATA AAAITTDLGA MDLDLDRLAE ECMELIGETG NLLDASGIGW APDGPPDWPP  540
SVVNGWLDTA KRACHQQNDR DRQPVQTSPG AVGAGAVVGV AAPAQVAPGL LGGDLLRPTP  600
MAQRGGGGSR GSGGEADGTP GGSCADELWS MYFGPMEPAG GQVALGHSPD PGQGCSLGGA  660
GSPAGSQGGH APALTLPSFD GCTAGWAHDS ADATRLRLLH HPRLRELVDA VVGCRKVVVR  720
SREAADELDA ARDAALRDLN KMRAQARSSG AVPPGYDPAL DLAVNQYIDL CEAYQAELTP  780
LFKEAEVLMQ DFETRLSSAL QRGADASARI TMPSSSGADA GALVSAGADP LLGGGGGEDL  840
ELRTVLKRKY TAQIRQLQEE FSKRKKIGKL PEDATSVLKQ WWAANFAWPY PGEDVKRQLG  900
AAAGLNATQI NNWFINQRKR HWHKLFLGRQ PASKEEAEVM LRKMKLIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3rd5_A5e-156420217127MYPAA.01249.C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1846865KRKYTAQIRQLQEEFSKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150H1U60.0A0A150H1U6_GONPE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.12e-23KNOTTED-like homeobox of Arabidopsis thaliana 7