PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ55984.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

HB-other

Protein Properties

Length: 1749aa MW: 168828 Da PI: 6.5532

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ55984.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.4	1.5e-05	1597	1629	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yps++e+e L +++gL+ q +WF N R + KXZ55984.1 1597 HPYPSEDEKEVLCNSTGLDLLQLNNWFINARVR 1629 89*****************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.256	1570	1633	IPR001356	Homeobox domain
SMART	SM00389	1.1E-4	1572	1637	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.55E-14	1572	1641	IPR009057	Homeodomain-like
CDD	cd00086	3.58E-8	1573	1633	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.3E-24	1576	1635	IPR009057	Homeodomain-like
Pfam	PF05920	8.0E-16	1590	1629	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0009506	Cellular Component	plasmodesma
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1749 aa Download sequence Send to blast
MAQQPYHTDY QSHQDWPDVG SPLQPQQQQQ QQLPQHLPPP AAAGPLPPLL ALPPLPRPPS 60 ASGVLTESVS APGALSRPEA GSPVSGDLAG GGLHYAAAAA GAGGGGGATG SPGSSGGGTR 120 KRPLSSAATF NEADFTAALG EAVRGHKARP PPPSEVMAAL AAAAAAATSG GGGASGMALD 180 FASGGTTAAA AAGEVTMVAA AAAAAEGAMQ ATDGERRSQL SSHTGLMLTG GSSGGGGATA 240 QAAAGQPPFA PAGPGPAAGG GQMLAGGDGG GGGGIAHATA PAAIGSGGGM AAAVAAAAAA 300 AAATGTVGGA AAWAPQQHAA ATPSEDSTSQ SMLVTPQCAP GAPLHHAPGP CPGSGAGHGP 360 GPGPGHGAAQ AFIAPGFAAG SSPVGSAAAM VAATTSGRGA PGPVSAPPYP YGGGAAAAEM 420 PPLQMPTAPL SAPPSTAPPT SSYAPQTGMP GLGRCFSDLS SYAYIMAMQG TPGGGGGGGG 480 GGGGGNGGGG ADPWVVAAAA SPMAAAAPPA GGTSGGLHPA PAAAGASGSG GSAAAAAMYG 540 MTLGAPPGSM PAGPWPQVAR VVVHSTRSNT RISSSRSSSS RSSSTALITR TLSSSSTLCS 600 SSSSRTSVAI TNPNYSTITG ISTARTTLME QLRAERERPA AGNNHIRNTS TNSTNSPTRA 660 AGGGGDGAVA VAPELGDGGG AGGAAAVAQE RGAPGGAGRR PPHRPPQGSL TASSSMEGGV 720 GDKTTAAATH TAAAGGGGAA AATPGLELLD TDHHASTTAS GGSLGRIVEM MFYQQPEDVA 780 GGGGGGGGGG AAGAAAAAAG VVRHATPVSP SPELLIRLAG GGGTDGRRTP GEAQGQDPGQ 840 QAVAAAAAAA VQEVARRLSP LLQPRLDSPD IFANWAVADE FAAQAASNNT ASDGGGGSGS 900 GGGATSGAGA EAAEWIRTPQ LDSLVADWVR GTPPPPSLLG LSDQFVPLQP LATPAPAPPQ 960 PAPPPAAATS PQDVHPGTVP KRAGAGPASV LELAAAGAIG DRNAGPGSSG ALTVATADAG 1020 ARPVANGLSS LPTSAAAEQY ATEATAATGR GGHGAAVTAL PLLPPAGGAA AAAADYAASS 1080 ALATLEALQT LMRTNIDPGA ASALLEELQY ITADPAAVGG GGGGSGGGSG GGSDELVRNP 1140 DADAEADVEA NVAAAGAAAA RPRAESDVGS TMRQQTPPQA LPPPLPLHLA PPASEPAGSR 1200 QQRQQQRPHP YSQHPSHPQL LLIQQQQQQQ QQQQQQQEQE QEHPRQEPPH LQHQDAVAMK 1260 RERYEASSVS HPAGPGPHSV GHLQRLLTEG GSFGGGGPDG AAGGQYPYQG AAHPQAGRGD 1320 PGAAAAAAAA AAAAAAAAAQ GWAFGLSDSS SPLHRAGSVG SMPVQVPQSS AAAAAAGDGR 1380 QRHTAYLAAP PTAPRADAGV DLYGTAYIGA QQQQQQQTRQ GQQQQQPHQQ QQQYGNWPSQ 1440 PYNEYDPLAA AIRQAHQAPP QSGPAVDMYG RQYDAMSVGA ADLAPPPQQG RVSYPGMHDT 1500 FSTVSTFGSG AGGGSSSNWT SLQGRVAAGA LAYGTSVAAP SRMINGRGLG FKASGGGGGG 1560 GGGGGANNGP GSKKGRENLP KTAVNSLKLW VYNHIVHPYP SEDEKEVLCN STGLDLLQLN 1620 NWFINARVRI WKPLITSVFN SNQPRMAQEA QARGDTELLG KMNAARNSPT AQLALVAADA 1680 TALTCLEQAA QAAAEELMAA AKATAGGGGG SKGGGGSSRR RGGGGGGGAG AGGGGGGGGS 1740 GESVSMEGY

Sequence ? help Back to Top

Protein Sequence Length: 1749 aa Download sequence Send to blast

MAQQPYHTDY QSHQDWPDVG SPLQPQQQQQ QQLPQHLPPP AAAGPLPPLL ALPPLPRPPS  60
ASGVLTESVS APGALSRPEA GSPVSGDLAG GGLHYAAAAA GAGGGGGATG SPGSSGGGTR  120
KRPLSSAATF NEADFTAALG EAVRGHKARP PPPSEVMAAL AAAAAAATSG GGGASGMALD  180
FASGGTTAAA AAGEVTMVAA AAAAAEGAMQ ATDGERRSQL SSHTGLMLTG GSSGGGGATA  240
QAAAGQPPFA PAGPGPAAGG GQMLAGGDGG GGGGIAHATA PAAIGSGGGM AAAVAAAAAA  300
AAATGTVGGA AAWAPQQHAA ATPSEDSTSQ SMLVTPQCAP GAPLHHAPGP CPGSGAGHGP  360
GPGPGHGAAQ AFIAPGFAAG SSPVGSAAAM VAATTSGRGA PGPVSAPPYP YGGGAAAAEM  420
PPLQMPTAPL SAPPSTAPPT SSYAPQTGMP GLGRCFSDLS SYAYIMAMQG TPGGGGGGGG  480
GGGGGNGGGG ADPWVVAAAA SPMAAAAPPA GGTSGGLHPA PAAAGASGSG GSAAAAAMYG  540
MTLGAPPGSM PAGPWPQVAR VVVHSTRSNT RISSSRSSSS RSSSTALITR TLSSSSTLCS  600
SSSSRTSVAI TNPNYSTITG ISTARTTLME QLRAERERPA AGNNHIRNTS TNSTNSPTRA  660
AGGGGDGAVA VAPELGDGGG AGGAAAVAQE RGAPGGAGRR PPHRPPQGSL TASSSMEGGV  720
GDKTTAAATH TAAAGGGGAA AATPGLELLD TDHHASTTAS GGSLGRIVEM MFYQQPEDVA  780
GGGGGGGGGG AAGAAAAAAG VVRHATPVSP SPELLIRLAG GGGTDGRRTP GEAQGQDPGQ  840
QAVAAAAAAA VQEVARRLSP LLQPRLDSPD IFANWAVADE FAAQAASNNT ASDGGGGSGS  900
GGGATSGAGA EAAEWIRTPQ LDSLVADWVR GTPPPPSLLG LSDQFVPLQP LATPAPAPPQ  960
PAPPPAAATS PQDVHPGTVP KRAGAGPASV LELAAAGAIG DRNAGPGSSG ALTVATADAG  1020
ARPVANGLSS LPTSAAAEQY ATEATAATGR GGHGAAVTAL PLLPPAGGAA AAAADYAASS  1080
ALATLEALQT LMRTNIDPGA ASALLEELQY ITADPAAVGG GGGGSGGGSG GGSDELVRNP  1140
DADAEADVEA NVAAAGAAAA RPRAESDVGS TMRQQTPPQA LPPPLPLHLA PPASEPAGSR  1200
QQRQQQRPHP YSQHPSHPQL LLIQQQQQQQ QQQQQQQEQE QEHPRQEPPH LQHQDAVAMK  1260
RERYEASSVS HPAGPGPHSV GHLQRLLTEG GSFGGGGPDG AAGGQYPYQG AAHPQAGRGD  1320
PGAAAAAAAA AAAAAAAAAQ GWAFGLSDSS SPLHRAGSVG SMPVQVPQSS AAAAAAGDGR  1380
QRHTAYLAAP PTAPRADAGV DLYGTAYIGA QQQQQQQTRQ GQQQQQPHQQ QQQYGNWPSQ  1440
PYNEYDPLAA AIRQAHQAPP QSGPAVDMYG RQYDAMSVGA ADLAPPPQQG RVSYPGMHDT  1500
FSTVSTFGSG AGGGSSSNWT SLQGRVAAGA LAYGTSVAAP SRMINGRGLG FKASGGGGGG  1560
GGGGGANNGP GSKKGRENLP KTAVNSLKLW VYNHIVHPYP SEDEKEVLCN STGLDLLQLN  1620
NWFINARVRI WKPLITSVFN SNQPRMAQEA QARGDTELLG KMNAARNSPT AQLALVAADA  1680
TALTCLEQAA QAAAEELMAA AKATAGGGGG SKGGGGSSRR RGGGGGGGAG AGGGGGGGGS  1740
GESVSMEGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-17	1579	1635	1	57	Homeobox protein Meis1
4xrs_B	1e-17	1579	1635	1	57	Homeobox protein Meis1
5bng_A	1e-17	1579	1635	1	57	Homeobox protein Meis2
5bng_B	1e-17	1579	1635	1	57	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A150H1Q0	0.0	A0A150H1Q0_GONPE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3210	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75430.1	8e-18	BEL1-like homeodomain 11