PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ55393.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | C3H | ||||||||
Protein Properties | Length: 224aa MW: 23186.1 Da PI: 9.0053 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.8 | 2.7e-11 | 35 | 59 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC f+ G+C+yGd+C+FaHg KXZ55393.1 35 KTRLCEKFMSQGHCPYGDKCTFAHG 59 9***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 8.7E-8 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.821 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-10 | 34 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-16 | 35 | 65 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MFPNPFFAAM GGPFGPGQGQ GQDGGRGNKG AGARKTRLCE KFMSQGHCPY GDKCTFAHGH 60 EELRSATPRD GPSQGMDGPM HMQLQQQQPP SLPGPAPPSE PFPGSAPAAA AAAAGPRQGA 120 LPGPPPAHPP GAASSPSPPP PAAPKAQEVT FVDKVRSLCG VLGIGNAAAL AAGKPLALQT 180 AAMSLRNGNA LRENPFADSV ERYLQQNQAQ QHHQVQQQQQ HMLH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150H069 | 1e-156 | A0A150H069_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP11265 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 4e-08 | C3H family protein |