PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ55380.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

MYB

Protein Properties

Length: 1105aa MW: 110158 Da PI: 6.2361

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ55380.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	8	49	15	48
HHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 15 avkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 +vkq+G g+W+ Iar ++ +gR +kqc++rw+ +l KXZ55380.1 8 LVKQFGEGNWSPIARALNeatgktesTGRIGKQCRERWNHHL 49 8*************************************9886 PP
2	Myb_DNA-binding	55.4	1.4e-17	55	97	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ vda+k+lG++ W+ Iar+++ gR+++ +k++w+ KXZ55380.1 55 KDPWTAEEERMVVDAHKRLGNR-WSDIARCIP-GRSENAVKNHWN 97 689*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-14	7	57	IPR009057	Homeodomain-like
CDD	cd00167	4.23E-5	7	49	No hit	No description
SMART	SM00717	3.1	7	51	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-5	8	48	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.549	8	49	IPR017877	Myb-like domain
SuperFamily	SSF46689	5.99E-23	35	106	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.497	50	104	IPR017930	Myb domain
SMART	SM00717	6.0E-16	54	102	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	55	97	IPR001005	SANT/Myb domain
CDD	cd00167	3.91E-12	57	100	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-19	58	103	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1105 aa Download sequence Send to blast
MPSDASALVK QFGEGNWSPI ARALNEATGK TESTGRIGKQ CRERWNHHLS PGLRKDPWTA 60 EEERMVVDAH KRLGNRWSDI ARCIPGRSEN AVKNHWNATL RKRVTPENPA GPLKEYLDTL 120 NLAVTPRKRG GGGGSGKRKR SRDRDSSSDE AEEDMDVESP ASETTSRNTR AWTAAATVTS 180 PATSVGTAFA ATGASPSAVQ SSFPAAAAAA AAAAAAAARL PSDSGSGGGA AGDQAYDADV 240 EEMAAAAAAA VQEAAEARRR RSRRLAAQIG SERMRSMVEA ERRGGEEDED EDDDTGEGRE 300 EGECQAEHDG GAEVSGGRAA AAAAPAAADG GGGAEPMAVC PTRTESICDN APGPAPKNAA 360 AAAAAMLAAR PVGASPFGRV AGRAATAGGS QPDGGCTKAK VERSADGSGL LPSESVAAAA 420 TGVAAMGSEL LTAAAAADGC SGGRGSGGKA PVLPPLRRAA SFAGPAAGCG EQRTVRPDCW 480 RPFPYNWSTN NMQQLAATAA EEPSPRACRP GAGGKVRPPT GGSPSARAAA AAAAAATAAG 540 DAFAASPLRA AAARTSDPGS GPHGEPSGSL RPASCAPGPT ATATADDDET CLLLSSPAAE 600 LAPPHSGMRH VASGSALLNY ETSPPPPALP PPARAAAAPA QADGAGGYGL GRGSDGGSGG 660 DDSDGGFRGR ISSPRPQAWQ QRCAAAGPGG LPVRTWTPPN LFDAPHLDFG CPDSPLMDGE 720 GCAYPSYYAP TQGVDRPRTP AAAAAAAGGA APVTAVGGGD AAAAAAAAAA DGFMEGAAGG 780 DSSLSSTGSP LSPHAGGAEY GPGGSFSGGG PGLRARAEQY EAFAAVAAAA AAGAAAGAEA 840 VAHLKRESSF GNCSNLEAVQ AHHAQYATAS AARTATAAAP PQPPPLASPW STAEAAAVAA 900 TAAAASNLPP LMQPSGWATH PQAHLQYLPP GHHYVWHGAP PPSLPVSASS PSLHALYGGH 960 APLHAGGAKL HMQAQPQPQA QALTPQYAFM SQLPPQAPPP VPAAGQQPPL QQQPLLAVHG 1020 APEPVYGTPA YVVGHPSGAY YYPYLGHPQC HLYGPVHASL PYAPPPAPLA AAQAAQPTDA 1080 GAEELLSASR SRAPQCMPLL GPADE

Sequence ? help Back to Top

Protein Sequence Length: 1105 aa Download sequence Send to blast

MPSDASALVK QFGEGNWSPI ARALNEATGK TESTGRIGKQ CRERWNHHLS PGLRKDPWTA  60
EEERMVVDAH KRLGNRWSDI ARCIPGRSEN AVKNHWNATL RKRVTPENPA GPLKEYLDTL  120
NLAVTPRKRG GGGGSGKRKR SRDRDSSSDE AEEDMDVESP ASETTSRNTR AWTAAATVTS  180
PATSVGTAFA ATGASPSAVQ SSFPAAAAAA AAAAAAAARL PSDSGSGGGA AGDQAYDADV  240
EEMAAAAAAA VQEAAEARRR RSRRLAAQIG SERMRSMVEA ERRGGEEDED EDDDTGEGRE  300
EGECQAEHDG GAEVSGGRAA AAAAPAAADG GGGAEPMAVC PTRTESICDN APGPAPKNAA  360
AAAAAMLAAR PVGASPFGRV AGRAATAGGS QPDGGCTKAK VERSADGSGL LPSESVAAAA  420
TGVAAMGSEL LTAAAAADGC SGGRGSGGKA PVLPPLRRAA SFAGPAAGCG EQRTVRPDCW  480
RPFPYNWSTN NMQQLAATAA EEPSPRACRP GAGGKVRPPT GGSPSARAAA AAAAAATAAG  540
DAFAASPLRA AAARTSDPGS GPHGEPSGSL RPASCAPGPT ATATADDDET CLLLSSPAAE  600
LAPPHSGMRH VASGSALLNY ETSPPPPALP PPARAAAAPA QADGAGGYGL GRGSDGGSGG  660
DDSDGGFRGR ISSPRPQAWQ QRCAAAGPGG LPVRTWTPPN LFDAPHLDFG CPDSPLMDGE  720
GCAYPSYYAP TQGVDRPRTP AAAAAAAGGA APVTAVGGGD AAAAAAAAAA DGFMEGAAGG  780
DSSLSSTGSP LSPHAGGAEY GPGGSFSGGG PGLRARAEQY EAFAAVAAAA AAGAAAGAEA  840
VAHLKRESSF GNCSNLEAVQ AHHAQYATAS AARTATAAAP PQPPPLASPW STAEAAAVAA  900
TAAAASNLPP LMQPSGWATH PQAHLQYLPP GHHYVWHGAP PPSLPVSASS PSLHALYGGH  960
APLHAGGAKL HMQAQPQPQA QALTPQYAFM SQLPPQAPPP VPAAGQQPPL QQQPLLAVHG  1020
APEPVYGTPA YVVGHPSGAY YYPYLGHPQC HLYGPVHASL PYAPPPAPLA AAQAAQPTDA  1080
GAEELLSASR SRAPQCMPLL GPADE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-34	8	104	18	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-34	8	104	18	105	C-Myb DNA-Binding Domain
1msf_C	3e-34	8	104	18	105	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A150H1E2	0.0	A0A150H1E2_GONPE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	3e-30	myb domain protein 3r-5