PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ54995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | SBP | ||||||||
Protein Properties | Length: 291aa MW: 29131.3 Da PI: 9.307 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 77.3 | 2.3e-24 | 28 | 99 | 4 | 75 |
STT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 4 vegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 ++gC dls+ k+y +r+ vCe+h ka +v+v g+e rfCqqC +f ++++f+ +rsC r ++ n rrr KXZ54995.1 28 ADGCGRDLSSEKTYLQRYSVCEAHFKADAVVVGGQEVRFCQQCNKFQDVRDFEGMRRSCVARSKHRNMRRRL 99 79*******************************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 20.196 | 23 | 100 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.11E-22 | 27 | 100 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-26 | 27 | 98 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-23 | 27 | 86 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MAANGSEKPG PQAFAMLDPY LGTALGRADG CGRDLSSEKT YLQRYSVCEA HFKADAVVVG 60 GQEVRFCQQC NKFQDVRDFE GMRRSCVARS KHRNMRRRLA STLNKGGSVD ELVLLGPGGD 120 GIQGHQSAKP KPKHQRQESY AGNGAVSGPR GGDTAEAAGV GGSSAAFPGV GGLGSTAAAA 180 AGGDGAVGSW LSLERVAQSF EQPGGRSGAG RVINLAALGG GSGGSSAAAA GGGLAGGASG 240 VAAGALENLW SDLGSFLTSA AGNAAEQRGT GPLMQPLSLR SHPHPSQAAA R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-14 | 22 | 98 | 7 | 83 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150GYX2 | 0.0 | A0A150GYX2_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 3e-18 | squamosa promoter binding protein-like 10 |