PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ54686.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | NF-YB | ||||||||
Protein Properties | Length: 236aa MW: 23550.1 Da PI: 4.0372 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 54.5 | 2.9e-17 | 12 | 113 | 3 | 97 |
NF-YB 3 eqdrflPianvsrimkkvlP....anak...iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 e+d +P a v ri+k l +++k iskda + e fis+++s a+d cq+++r t+n+dd++ al++l f + v plk l+ ++e+ KXZ54686.1 12 ETDVDVPRALVKRIVKAKLQgltgGDGKefgISKDALTALSESTKVFISLIASTANDICQEKRRSTVNADDIFNALGDLDFPELVGPLKEQLEAFKEAT 110 6788899999****99988622223555666******************************************************************98 PP NF-YB 95 gek 97 +e+ KXZ54686.1 111 KER 113 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.8E-31 | 7 | 124 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.44E-23 | 14 | 123 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.0E-10 | 17 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDVQNASPEK PETDVDVPRA LVKRIVKAKL QGLTGGDGKE FGISKDALTA LSESTKVFIS 60 LIASTANDIC QEKRRSTVNA DDIFNALGDL DFPELVGPLK EQLEAFKEAT KERSKSRPSK 120 KRKSTADAPA AAPRTAMGVA GAVDDAADTG GEGEGDAGPL DGDLAGALVG DAGPGGDDDG 180 PLDGGLLGVA DADAAVGLLG GTAGDDGLGN LGLGLGAGDG EVDVESMLVD APPGVA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002951737.1 | 6e-70 | hypothetical protein VOLCADRAFT_105243 | ||||
TrEMBL | A0A150GXQ4 | 1e-158 | A0A150GXQ4_GONPE; Uncharacterized protein | ||||
STRING | XP_002951737.1 | 2e-69 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3453 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-21 | nuclear factor Y, subunit B11 |