PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ54384.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

SBP

Protein Properties

Length: 1095aa MW: 113732 Da PI: 7.0326

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ54384.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	112.8	2.1e-35	353	428	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC +dls++keyh+r+++C+vh k ++v+ +g+ qrfCqqC+rfh+l+ fD +++sCr++L+khn+rrr+++ KXZ54384.1 353 CQVPGCGKDLSHLKEYHQRYRICDVHIKLQQVMKDGRLQRFCQQCGRFHDLTAFDGNRKSCREQLSKHNARRRRRT 428 *************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.7E-29	349	414	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	28.256	350	427	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.37E-31	352	427	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.1E-30	353	426	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	6.2E-10	809	959	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.61E-9	816	961	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.89E-9	866	959	No hit	No description
PROSITE profile	PS50297	10.949	868	957	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055070	Biological Process	copper ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1095 aa Download sequence Send to blast
MDFGLFQEDS SSERQNSLSS GGDLDPFLLQ GDDQTWAVED WNWDPFNMFA APKEVSGLSI 60 FEYVTRFGAA VAQVAADARH NGPPIFKSEP ELVANTGCHF PGMPAPMPAM PPIANVAASG 120 PQMSGMGFGM PMGMGMGMPW QNLPGMGAAA AVAAAAAAAS APALFANMAG ARSPFNALGW 180 GGMNLPGMAF ANAPNGGMMA LQRPATNFQA PSGLLNQQTS LALPPSSQPS PVMGSCGDSG 240 SLQGSADNAK PPCCSGNRAG DGPTCSGGRQ QADSSNKGNA PLHGSSHPAA YMGGRGGAGQ 300 AAAGDLSDVA ISESEDEREE VPRGRGGRGP QQVLHSLADV VALADAGDDS GLCQVPGCGK 360 DLSHLKEYHQ RYRICDVHIK LQQVMKDGRL QRFCQQCGRF HDLTAFDGNR KSCREQLSKH 420 NARRRRRTGV EPAKGKAAAG APTLEAPAAV PGSVAGVGAG PSAAGFDGDI GKLVSSLMSN 480 PTQLHALKLL LGVPTHPALP AMQPTAGMQL PLGGRAGSPD SPSDASASDQ ARTYGLARDI 540 LAGRNEFAPA YTSEHRTVRL SMKLFSRTPS DLPPDLRNQV TSWLASSPAA VEASIRPGCV 600 FLTVQLLLDE AAAAQAEAPG AVASLLEHLV FRSGCPFWRS GMLALQLGRE VVLMREGHVA 660 GVADDSAAPE LRRLGPLAAV AGRAVVLRLN GDRLDAPGSE VIMRWGAKHV KLPLQPVSPN 720 RALVHVPALP DICGPVWVEV GRGALLSEAQ QLLVVRDEAL AEEINKLDAR DSPLPTGRVE 780 ALLRDLALVL QHISGEQGAA LQLPHTAIAT KARRLLAVAC DMGWAAVASA VLPLACARCS 840 CAAEMVAAIH AAAGEPATAT GAEGADPRGL SLLHRAVRGG SVPLLAGMLA WGDSHGYRWP 900 VDAAGPAGIT PLHLCALLDD ADMALRLLDH CGWPAAFTEL RSDDGVTPFH LAFQMGRYQA 960 RARKARAAAA AKRRPGDGDD DDADEARPLA RGRQRGHHAE GCTPLHPCEA CHCTLPPLLL 1020 SIAASCSDCG RRRNCLPPLL SAGAASRCRE CACGGARPSL RADLGELCAS AAHSSVFSIT 1080 ALCQGCHGNR VLAVA

Sequence ? help Back to Top

Protein Sequence Length: 1095 aa Download sequence Send to blast

MDFGLFQEDS SSERQNSLSS GGDLDPFLLQ GDDQTWAVED WNWDPFNMFA APKEVSGLSI  60
FEYVTRFGAA VAQVAADARH NGPPIFKSEP ELVANTGCHF PGMPAPMPAM PPIANVAASG  120
PQMSGMGFGM PMGMGMGMPW QNLPGMGAAA AVAAAAAAAS APALFANMAG ARSPFNALGW  180
GGMNLPGMAF ANAPNGGMMA LQRPATNFQA PSGLLNQQTS LALPPSSQPS PVMGSCGDSG  240
SLQGSADNAK PPCCSGNRAG DGPTCSGGRQ QADSSNKGNA PLHGSSHPAA YMGGRGGAGQ  300
AAAGDLSDVA ISESEDEREE VPRGRGGRGP QQVLHSLADV VALADAGDDS GLCQVPGCGK  360
DLSHLKEYHQ RYRICDVHIK LQQVMKDGRL QRFCQQCGRF HDLTAFDGNR KSCREQLSKH  420
NARRRRRTGV EPAKGKAAAG APTLEAPAAV PGSVAGVGAG PSAAGFDGDI GKLVSSLMSN  480
PTQLHALKLL LGVPTHPALP AMQPTAGMQL PLGGRAGSPD SPSDASASDQ ARTYGLARDI  540
LAGRNEFAPA YTSEHRTVRL SMKLFSRTPS DLPPDLRNQV TSWLASSPAA VEASIRPGCV  600
FLTVQLLLDE AAAAQAEAPG AVASLLEHLV FRSGCPFWRS GMLALQLGRE VVLMREGHVA  660
GVADDSAAPE LRRLGPLAAV AGRAVVLRLN GDRLDAPGSE VIMRWGAKHV KLPLQPVSPN  720
RALVHVPALP DICGPVWVEV GRGALLSEAQ QLLVVRDEAL AEEINKLDAR DSPLPTGRVE  780
ALLRDLALVL QHISGEQGAA LQLPHTAIAT KARRLLAVAC DMGWAAVASA VLPLACARCS  840
CAAEMVAAIH AAAGEPATAT GAEGADPRGL SLLHRAVRGG SVPLLAGMLA WGDSHGYRWP  900
VDAAGPAGIT PLHLCALLDD ADMALRLLDH CGWPAAFTEL RSDDGVTPFH LAFQMGRYQA  960
RARKARAAAA AKRRPGDGDD DDADEARPLA RGRQRGHHAE GCTPLHPCEA CHCTLPPLLL  1020
SIAASCSDCG RRRNCLPPLL SAGAASRCRE CACGGARPSL RADLGELCAS AAHSSVFSIT  1080
ALCQGCHGNR VLAVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	1e-19	353	427	6	80	squamosa promoter binding protein-like 7
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	422	427	RRRRRT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00604	PBM	Transfer from AT5G18830	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002948544.1	0.0	hypothetical protein VOLCADRAFT_58461
TrEMBL	A0A150GX43	0.0	A0A150GX43_GONPE; Uncharacterized protein
STRING	XP_002948544.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5500	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	7e-23	SBP family protein