PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ54370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | C3H | ||||||||
Protein Properties | Length: 240aa MW: 27334.9 Da PI: 9.0397 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.2e-07 | 101 | 124 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ Cr + + tC++G+ C+F+H KXZ54370.1 101 REATCRQYEE-NTCNRGGYCNFMHL 124 6789**9999.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12539 | 1.71E-59 | 1 | 96 | No hit | No description |
PROSITE profile | PS50102 | 10.326 | 15 | 97 | IPR000504 | RNA recognition motif domain |
SMART | SM00361 | 5.1E-7 | 18 | 93 | IPR003954 | RNA recognition motif domain, eukaryote |
Gene3D | G3DSA:3.30.70.330 | 3.7E-19 | 25 | 96 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 5.4E-36 | 26 | 41 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 2.17E-16 | 27 | 100 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 5.4E-36 | 54 | 76 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 5.4E-36 | 81 | 105 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 11.554 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-5 | 101 | 124 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 5.4E-36 | 116 | 128 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MYQNPLLNAP LGPDGLPIRV DPKAAQEHFE DFYEDVFEEL AQHGELENLN VCDNFADHMV 60 GNVYAKFRDE DAAARALQAL TGRYYDGRPI VIEFSPVTDF REATCRQYEE NTCNRGGYCN 120 FMHLKPISRD LRKKLFGRYK RRERSRSRDR GDRRDRERDP RGRDRSRDRA DRGRGRSRSR 180 DRGGADRRRE TSEERRAKFA AWNAERDDRG GGGGGGEYGG GGYGAPPPGP PGGYGGGYQY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 1e-37 | 1 | 135 | 51 | 179 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 171 | 181 | RGRGRSRSRDR |
2 | 173 | 181 | RGRSRSRDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Necessary for the splicing of pre-mRNA (By similarity). Probably active at the 3' splice sites. {ECO:0000250}. | |||||
UniProt | Necessary for the splicing of pre-mRNA. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001696419.1 | 1e-95 | U2 snRNP auxiliary factor, small subunit | ||||
Swissprot | Q9FMY5 | 1e-69 | U2AFB_ARATH; Splicing factor U2af small subunit B | ||||
Swissprot | Q9ZQW8 | 2e-69 | U2AFA_ORYSJ; Splicing factor U2af small subunit A | ||||
TrEMBL | A0A150GYH9 | 1e-171 | A0A150GYH9_GONPE; Uncharacterized protein | ||||
STRING | EDP08396 | 6e-95 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2040 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 7e-21 | C3H family protein |
Publications ? help Back to Top | |||
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