PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ53060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | NF-YB | ||||||||
Protein Properties | Length: 177aa MW: 18994.3 Da PI: 4.5297 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 56 | 9.7e-18 | 3 | 93 | 2 | 92 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +e+d lP + +++++k +P + ++++d+ e+v c +efi +v+se+++ + re r i +d +l al++lGf +v +++ ++e KXZ53060.1 3 EENDVSLPRTTLQKMIKDCMPPDMRVANDTVELVIACCTEFIQLVSSESNEVATREGRSIIHPDHVLKALTELGFPGFVGEVTSAWDTFKE 93 588999*************************************************************************999887777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.0E-32 | 3 | 138 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.82E-28 | 5 | 135 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.0E-15 | 8 | 72 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSEENDVSLP RTTLQKMIKD CMPPDMRVAN DTVELVIACC TEFIQLVSSE SNEVATREGR 60 SIIHPDHVLK ALTELGFPGF VGEVTSAWDT FKEETKTAHS RKADLRKTGA EQAGLTEEEQ 120 ILLQQQMFAQ ARAQSMTTSE SAAAMHAAYE QALAAQAAAQ AAAAAGAGVG QAQQQPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 8e-30 | 4 | 132 | 11 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002953528.1 | 1e-83 | hypothetical protein VOLCADRAFT_94228 | ||||
TrEMBL | A0A150GUQ4 | 1e-126 | A0A150GUQ4_GONPE; Uncharacterized protein | ||||
STRING | XP_002953528.1 | 4e-83 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2422 | 15 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 4e-31 | nuclear factor Y, subunit B13 |