PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ52576.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | C3H | ||||||||
Protein Properties | Length: 222aa MW: 22478.8 Da PI: 6.1188 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 8.1e-06 | 153 | 176 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++Cr+f r G+C d C+F H+ KXZ52576.1 153 KVPICRYFKR-GYCYENDECRFLHV 176 889***9999.*************7 PP | |||||||
2 | zf-CCCH | 19.3 | 2e-06 | 178 | 198 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 e Cr+f r G C+yGd+C + H KXZ52576.1 178 EVCRNFKR-GNCRYGDNCYRLH 198 78******.*********8888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.202 | 151 | 178 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-4 | 151 | 177 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 154 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-4 | 155 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-4 | 178 | 198 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.15 | 178 | 200 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 178 | 199 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.357 | 179 | 201 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEEYFKSHTC GKTCKALGLD VKSSPLAELA NIRGRIKQAA LRYQAAILGT EQPAGGDGAG 60 GDGKAADDVN GGGNDGGGAA AAVPDVSSAE YMDVLKGFLG ELVGEDGNVT EDDCGEGTAA 120 AAGGADDGAG GAGSAGGAGG AGGAGGAGGI GGKVPICRYF KRGYCYENDE CRFLHVKEVC 180 RNFKRGNCRY GDNCYRLHEQ QPASPSPPTP PPTAAKSRHR YK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150GRT1 | 1e-156 | A0A150GRT1_GONPE; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 2e-07 | C3H family protein |