PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ52260.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

MYB

Protein Properties

Length: 1003aa MW: 106305 Da PI: 6.0167

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ52260.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.2e-07	422	463	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W +eE ++ d + q++++ +++I+ +++ gR++ +c+ +++k KXZ52260.1 422 SWAEEERTQFMDRFLQHPKD-FRKISTYLP-GRSPGDCVAFFYK 463 7***************99.*****.********998 PP
2	Myb_DNA-binding	32.3	2.2e-10	929	972	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eE + ++++++ +G + W++ a+ ++ +++ q+k ++++y+ KXZ52260.1 929 YWSQEEKDTFLEVFQIYGRD-WARLAEAIP-TKSTSQIKTYFHNYK 972 5***************77.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.06E-11	406	467	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.484	418	469	IPR017884	SANT domain
SMART	SM00717	1.0E-5	419	467	IPR001005	SANT/Myb domain
CDD	cd00167	2.77E-5	422	464	No hit	No description
Pfam	PF00249	1.5E-5	422	463	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	9.416	637	685	IPR017884	SANT domain
SMART	SM00717	5.7	638	683	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.79E-5	640	686	IPR009057	Homeodomain-like
CDD	cd00167	9.56E-4	642	681	No hit	No description
SuperFamily	SSF46689	9.72E-12	925	976	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.04	925	976	IPR017884	SANT domain
SMART	SM00717	1.7E-10	926	974	IPR001005	SANT/Myb domain
Pfam	PF00249	6.9E-10	929	972	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-8	930	972	IPR009057	Homeodomain-like
CDD	cd00167	5.04E-8	930	972	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MAEDGELPVA GLSLRIEHLE TEITDLERQL SQLVAEARRT QAEAAELETD VGALDEQLLQ 60 DSSSSGEDSG GDSEEEEEQD IGTIADGGAA DSSAAAAAAA AAAPSVPAVA LEQPVPAALP 120 QAAIAVTMDS AAVVSTAPQL LEAAPAASRR RSEVGPESEV EDSARLYEAE EDGAGGQSLK 180 PRGRPRSTAK ARAAEAAAAA AAAADSRRKA LEEKIRVPPD GLLHLPAHQF RPRFLQAARY 240 SIEEWREEVL RLLPDEFGAR ELPSFHANAA RHTAICGAVG RYLRQRRQLV AAKHEVLVQQ 300 YTRNMAAFKE YMQAEARRPP PPPPPLPSGR GSASASYGMY ASSRAVSSYN PYAYSHSDVI 360 RSDLDEQRLL NNFIAVEQLK HMCALPDMVL DPWERRWRAY DNRNGLVQDP VRELEEERMV 420 KSWAEEERTQ FMDRFLQHPK DFRKISTYLP GRSPGDCVAF FYKNQKLDEF GTVRRKQQLK 480 KRRLQADMRK QQPLLVAPML ARQRAMGAGG IVGGDAGMRG GSRGRGGVRS AAGRGQRGAN 540 LSDTDNAFGP GPLGMGHNGL PMPGAPRAPP GSMPGYHSMM AAAHRPGLLG LGAAGEGRDL 600 QPAPLLPPIS SAASQQPSSP QYPQQQQPAA TLPSGGSTGA GWTDEDFVEC FRQHGKNWEA 660 YCRHLGIRSE AAAKQYFYRH KERLGLDRIQ PNVQHLGGTV EANGVTVIAA VSAAGPGLSL 720 ESSEVSRHES GRYKPDLDSE IRSDSEFDPA AAQGVAAGAG QGLGAAAVNG ESGGGDGSLP 780 QHIDLLAALR NPGGNPLTQL LHGGLLQAPG GGKGGSGTQL GGVLSQLLMQ QQPHLDQQGA 840 ARENMDSQQG LGALAMGLNM LGDMTGVLQG GLGTSGTGAA GLSLFTGPSG VSQSDDPSGP 900 LSSPTDDSGA GLAGNGGVGP SGRRFGANYW SQEEKDTFLE VFQIYGRDWA RLAEAIPTKS 960 TSQIKTYFHN YKTKLGFDKM ELPPTAAQAG GRRACGDDRG SSG

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MAEDGELPVA GLSLRIEHLE TEITDLERQL SQLVAEARRT QAEAAELETD VGALDEQLLQ  60
DSSSSGEDSG GDSEEEEEQD IGTIADGGAA DSSAAAAAAA AAAPSVPAVA LEQPVPAALP  120
QAAIAVTMDS AAVVSTAPQL LEAAPAASRR RSEVGPESEV EDSARLYEAE EDGAGGQSLK  180
PRGRPRSTAK ARAAEAAAAA AAAADSRRKA LEEKIRVPPD GLLHLPAHQF RPRFLQAARY  240
SIEEWREEVL RLLPDEFGAR ELPSFHANAA RHTAICGAVG RYLRQRRQLV AAKHEVLVQQ  300
YTRNMAAFKE YMQAEARRPP PPPPPLPSGR GSASASYGMY ASSRAVSSYN PYAYSHSDVI  360
RSDLDEQRLL NNFIAVEQLK HMCALPDMVL DPWERRWRAY DNRNGLVQDP VRELEEERMV  420
KSWAEEERTQ FMDRFLQHPK DFRKISTYLP GRSPGDCVAF FYKNQKLDEF GTVRRKQQLK  480
KRRLQADMRK QQPLLVAPML ARQRAMGAGG IVGGDAGMRG GSRGRGGVRS AAGRGQRGAN  540
LSDTDNAFGP GPLGMGHNGL PMPGAPRAPP GSMPGYHSMM AAAHRPGLLG LGAAGEGRDL  600
QPAPLLPPIS SAASQQPSSP QYPQQQQPAA TLPSGGSTGA GWTDEDFVEC FRQHGKNWEA  660
YCRHLGIRSE AAAKQYFYRH KERLGLDRIQ PNVQHLGGTV EANGVTVIAA VSAAGPGLSL  720
ESSEVSRHES GRYKPDLDSE IRSDSEFDPA AAQGVAAGAG QGLGAAAVNG ESGGGDGSLP  780
QHIDLLAALR NPGGNPLTQL LHGGLLQAPG GGKGGSGTQL GGVLSQLLMQ QQPHLDQQGA  840
ARENMDSQQG LGALAMGLNM LGDMTGVLQG GLGTSGTGAA GLSLFTGPSG VSQSDDPSGP  900
LSSPTDDSGA GLAGNGGVGP SGRRFGANYW SQEEKDTFLE VFQIYGRDWA RLAEAIPTKS  960
TSQIKTYFHN YKTKLGFDKM ELPPTAAQAG GRRACGDDRG SSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002946132.1	0.0	hypothetical protein VOLCADRAFT_127385
TrEMBL	A0A150GSG2	0.0	A0A150GSG2_GONPE; Uncharacterized protein
STRING	XP_002946132.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2883	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-16	MYB family protein