PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ50420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | SBP | ||||||||
Protein Properties | Length: 417aa MW: 41782.9 Da PI: 8.6038 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 73 | 5.1e-23 | 49 | 124 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+ +C +ls+ak y rr+ vCe h ka+ v++ g + rfCqqC +f l++f ++rsC+ r ++ n rrrk+++ KXZ50420.1 49 CQA-NCGRELSDAKLYLRRYSVCEPHFKAEWVTLGGGRFRFCQQCNKFQPLDNFAGNRRSCKARSEDRNLRRRKQRT 124 775.7*********************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.3E-22 | 43 | 109 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.811 | 46 | 122 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.15E-21 | 48 | 125 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.4E-25 | 50 | 121 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MAQLQAAQAH VQQAQADGEQ DQDNDPFGSP DGQSRKPRKL RKPNDVARCQ ANCGRELSDA 60 KLYLRRYSVC EPHFKAEWVT LGGGRFRFCQ QCNKFQPLDN FAGNRRSCKA RSEDRNLRRR 120 KQRTDERQAA EDDSDPGGRA GLLKVQGGQL AVPARVALAD NGMLRQLADP NDPLAQLQYA 180 QQVSQFLVAG AGGLAPAPAA AVQLPPGLDL AALMGGDFSA FGSPNANALS LLTAAAANGA 240 GLARTTAAPA PDPSGGAAVL QQLQLAQLLA KGAAAGGGGA AAAGGALGSL GAAAANGLAA 300 ALGAAGLNLS GVGSPTAAGA AGSGSLAHQL IMSTAAAGSS GSAGVAAPDS TLDLQSLVAQ 360 QLAQQLAAQQ AATQSPQQPG GGAVGGQGPM LLLGAGNQNM MLLSLEQLLT QGAGVAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-13 | 49 | 121 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | DRNLRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150GM71 | 0.0 | A0A150GM71_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 5e-16 | squamosa promoter binding protein-like 8 |