PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ50272.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

SBP

Protein Properties

Length: 1479aa MW: 149999 Da PI: 5.828

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ50272.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	81.3	1.4e-25	45	121	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C v+gC + ++ +k+y+ r ++Ce+h +++++v+g+ rfCqqC+rf lsef +k+sC rL+k n+r r+k+ KXZ50272.1 45 ICVVDGCGVSIAGLKRYFTRLRICEAHLGSSAIVVNGVVSRFCQQCGRFQPLSEFTGKKKSCIARLEKVNARHREKA 121 5***********************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.2E-23	41	106	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.341	43	120	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.49E-23	45	120	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.7E-26	46	119	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1479 aa Download sequence Send to blast
MGTLGAEPSG IVVKTKPLLT NPKFADLPVY NSVMRFNNCS ASEAICVVDG CGVSIAGLKR 60 YFTRLRICEA HLGSSAIVVN GVVSRFCQQC GRFQPLSEFT GKKKSCIARL EKVNARHREK 120 AQLVKQQRRG ESPPAPQWMD SLPFTQAAVT GPIKLESILA APPAAAAAVV PQPIAPPEVQ 180 SNKLAPHLPL PLLGGQPSAD TAVSGPSRVS VERAVSLGGA SSSIVALPPT LVGAASLLPA 240 APGPAAAASS ESSLLEVKSL TAALVAKSDR ASSGESDFAS DVKEPDLPLT RIVTTAGPGL 300 VWYSIQRRPS EPDHASSGTR SPKTAATLAA GGSGGGSALL PMGSCASTAA GGNLTLPATA 360 ARSAALVAVR PPRIVYWNEV TTAINMVGDP AAAAAAAAAA AAVPSPPEDV RRALDAAAGE 420 LYYPLVLPVK LEVQVSDSAE PLGRVPAGKA GRALVPRIVT AGTSGESRPW TGSPSIAEPC 480 APAAVAMPVE NPSAAAARLT PAPALSNHSH HSAVGAAPGG GMPGSPLSAT NDRTTNDRTS 540 AAHEAAGGND VDASSRPSNA PGADTRVAVA ARISHIMTEL APLLAQAQSL AAEGPHDRDR 600 GVAPRRPPAV TEAVGEVDWQ QLRSTGGTLA APSLETAVAP TRGKRPLSQV VDDAAELMQR 660 AAQLDSVLHR RQRHQLPHQH QSQAEASLFE ARQLSAVQSR AAREPSPIQQ QQQQLQQADV 720 GLRQGPLQHS AVLAMPQAQA REQYRSSGAW PQAGPDVAAA LYAPEAQAAH GRPLENGSRG 780 GPVWQPQPRS QPQLQAVQAL AEEPMNDLMP DGGYGSVSVP PPASLAPSQQ QQLRDMQGLL 840 QHAHGLEDQV TARNRTVAAA LQQGISVHRQ ALAGMPYGNG GAGDAMDLDR VSIKAMALQP 900 EELPANLRSG MGRWLAGARA EALQGTLRPG CLQLVVDVVR PAAVAAAAGD LASLLIPASE 960 PEQAAADIFR FMGQRLRDTY VQVGDQVLAI RVGEDPVVYG WEEAAADGGL PGAKMPRLEG 1020 CSAAAVCAGA TARLRLRGQC LDQPGIRAFA RLRGRDLQAA AAVGPSSGAA GGASSGDQAL 1080 CVDVTLPARA AGLMVVEVAL GHLLGGWWPV LVLPRGQEGA ERELQDLQAQ EAGGAGALDR 1140 RLVYDLGQVL AVSGAAAAAA AAEAAAAAEI AAAAAALAIG GDVGGPTSPT PSVDSAGIGA 1200 VGDGGRSRSP GSPSSIGASG AGNGGGGSTN ATSAAGGWAY TDAGDTLAST SAAGSSHLST 1260 RFSAANASNG RGLDLQALLP LAVLSGSTAV VDELTAFADA ALGEPLRLDL PQGPAGMTLL 1320 HLAAVLDDGG AMASHLITTQ PWAAWTWLCV GWEPERAPGG TSEPSAAAED GASDGEAAAA 1380 SLAPKLDARV TPGSLSLALG CVEPLQRTMT MLVLREEDVV LVQGEAGLAG GKPAAEAAVG 1440 ALEASASVED GLADVVEAWG RLSGALLSAL CEELAKQRL

Sequence ? help Back to Top

Protein Sequence Length: 1479 aa Download sequence Send to blast

MGTLGAEPSG IVVKTKPLLT NPKFADLPVY NSVMRFNNCS ASEAICVVDG CGVSIAGLKR  60
YFTRLRICEA HLGSSAIVVN GVVSRFCQQC GRFQPLSEFT GKKKSCIARL EKVNARHREK  120
AQLVKQQRRG ESPPAPQWMD SLPFTQAAVT GPIKLESILA APPAAAAAVV PQPIAPPEVQ  180
SNKLAPHLPL PLLGGQPSAD TAVSGPSRVS VERAVSLGGA SSSIVALPPT LVGAASLLPA  240
APGPAAAASS ESSLLEVKSL TAALVAKSDR ASSGESDFAS DVKEPDLPLT RIVTTAGPGL  300
VWYSIQRRPS EPDHASSGTR SPKTAATLAA GGSGGGSALL PMGSCASTAA GGNLTLPATA  360
ARSAALVAVR PPRIVYWNEV TTAINMVGDP AAAAAAAAAA AAVPSPPEDV RRALDAAAGE  420
LYYPLVLPVK LEVQVSDSAE PLGRVPAGKA GRALVPRIVT AGTSGESRPW TGSPSIAEPC  480
APAAVAMPVE NPSAAAARLT PAPALSNHSH HSAVGAAPGG GMPGSPLSAT NDRTTNDRTS  540
AAHEAAGGND VDASSRPSNA PGADTRVAVA ARISHIMTEL APLLAQAQSL AAEGPHDRDR  600
GVAPRRPPAV TEAVGEVDWQ QLRSTGGTLA APSLETAVAP TRGKRPLSQV VDDAAELMQR  660
AAQLDSVLHR RQRHQLPHQH QSQAEASLFE ARQLSAVQSR AAREPSPIQQ QQQQLQQADV  720
GLRQGPLQHS AVLAMPQAQA REQYRSSGAW PQAGPDVAAA LYAPEAQAAH GRPLENGSRG  780
GPVWQPQPRS QPQLQAVQAL AEEPMNDLMP DGGYGSVSVP PPASLAPSQQ QQLRDMQGLL  840
QHAHGLEDQV TARNRTVAAA LQQGISVHRQ ALAGMPYGNG GAGDAMDLDR VSIKAMALQP  900
EELPANLRSG MGRWLAGARA EALQGTLRPG CLQLVVDVVR PAAVAAAAGD LASLLIPASE  960
PEQAAADIFR FMGQRLRDTY VQVGDQVLAI RVGEDPVVYG WEEAAADGGL PGAKMPRLEG  1020
CSAAAVCAGA TARLRLRGQC LDQPGIRAFA RLRGRDLQAA AAVGPSSGAA GGASSGDQAL  1080
CVDVTLPARA AGLMVVEVAL GHLLGGWWPV LVLPRGQEGA ERELQDLQAQ EAGGAGALDR  1140
RLVYDLGQVL AVSGAAAAAA AAEAAAAAEI AAAAAALAIG GDVGGPTSPT PSVDSAGIGA  1200
VGDGGRSRSP GSPSSIGASG AGNGGGGSTN ATSAAGGWAY TDAGDTLAST SAAGSSHLST  1260
RFSAANASNG RGLDLQALLP LAVLSGSTAV VDELTAFADA ALGEPLRLDL PQGPAGMTLL  1320
HLAAVLDDGG AMASHLITTQ PWAAWTWLCV GWEPERAPGG TSEPSAAAED GASDGEAAAA  1380
SLAPKLDARV TPGSLSLALG CVEPLQRTMT MLVLREEDVV LVQGEAGLAG GKPAAEAAVG  1440
ALEASASVED GLADVVEAWG RLSGALLSAL CEELAKQRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A150GKE7	0.0	A0A150GKE7_GONPE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	2e-17	squamosa promoter binding protein-like 2