PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ50104.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 755aa    MW: 78203.4 Da    PI: 5.951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ50104.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-10262287127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt++C+ +   G C+yG++Ck+aHg+
  KXZ50104.1 262 WKTRICNKWKD-GNCPYGETCKYAHGE 287
                 8**********.*************96 PP
2zf-CCCH35.12.3e-11324349227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+ C  f +tG CkyGd+C++aH++
  KXZ50104.1 324 KTRMCEEFVKTGSCKYGDKCTYAHSQ 349
                 9***********************97 PP
3zf-CCCH39.49.7e-13386410226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 kt+lC +f+ tG C+yGd+C+FaHg
  KXZ50104.1 386 KTRLCERFMNTGNCPYGDKCTFAHG 410
                 8***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-15258293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-8260292IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7261287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46261288IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-8262287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-9321354IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6322349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432322350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-14323355IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8324349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-15383416IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-7384411IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9384416IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244384412IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10386410IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MYQNNAMYGN MMGQMGQQGQ GMGQMGQMGN MGQMMPNQGG MQNPQMAQMA SQQVQQQQSM  60
GQQAAQNNAM MASLQAGGMA GMGQNNMATA AGQQGAAPAA GAAAGMQGAN AMMAAAGQQG  120
MNPAAMMGQM GQQGMNPMLA NWQAMAASNP QAMAAMQAYM QQYAMRMAAF QRMAAAASTG  180
GMGAMGAPGA MGMGAMGGMG GMQGMAGPMG AMGSMAGPMG AMGMPGPMGM MAGQMGAMGG  240
AQQMQGGRSG QQQDGGENSR FWKTRICNKW KDGNCPYGET CKYAHGEHDL RPPGGGDMGK  300
AGGGGNRGKP EIADKRTMLE LMRKTRMCEE FVKTGSCKYG DKCTYAHSQA ELRQAPNLKE  360
AMTQQQMGQA GQGVAAGGAG KDNMHKTRLC ERFMNTGNCP YGDKCTFAHG HHELRQRAPG  420
AGKGQAQQQQ QRQQQKPGPQ QQKPGQPGAQ TGAAGAAAGG PIPAVGVKRE REDDGPGGES  480
EHGEEAAKRQ HTGADGQGQG EDGEGGGASS QHLQHQDSNA GGGDWGWDAQ QYGKPWGEDA  540
DGTGQQSHDG EGEGDGADAD GADADGEHGS PGGGQAGGGD NTATAGGEAP AGPDSGHEGD  600
CPLCARMVRA GRDKMLAAVQ QMAGPSAQKL GAMILGYGTP RFDQLWHKLS FAQLQSMLAR  660
ADLSLSDRID LLKAVCFHTH ASEEERERLG IQKYVSQGLP PDVADFVAMV LDGKEGTAQM  720
TEYFSALETC KALYGVSDEE YFTVSSTMAS LFVNM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150GK120.0A0A150GK12_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP551277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.15e-15C3H family protein