PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ48608.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | NF-YC | ||||||||
Protein Properties | Length: 256aa MW: 25508.1 Da PI: 4.9241 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.6 | 7.2e-15 | 7 | 84 | 21 | 97 |
NF-YC 21 lPl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 Pl +rikk++++d+dv +is +P+l+ +a elf+ ++ ++ a++ + +tl s ++aavt ++ dfl + v KXZ48608.1 7 CPLaTRIKKMMQTDDDVGKISQATPILIGRAMELFLEKICKQAIGVAQSRQAKTLTPSHLKAAVTADTTLDFLAELVA 84 57636********************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.71E-19 | 11 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-16 | 11 | 70 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.2E-24 | 11 | 83 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MKSKKICPLA TRIKKMMQTD DDVGKISQAT PILIGRAMEL FLEKICKQAI GVAQSRQAKT 60 LTPSHLKAAV TADTTLDFLA ELVASAPDLP PPDTEGTDGA PKAAKRRRGK NLGPKGAAAG 120 APLPAAVPGP TGPAVKLEPY AGLLPEGLQL PAAGKGEPDA MDVEGPGGHG AVGPSGQLPL 180 ELGHPLAGAD AAAGREGGGS APPPELQAQA APGTAPTLSG GAEGGLQAGG SMLPQLGSSL 240 GFIPGPSDMD DDYDDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-18 | 12 | 70 | 16 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 106 | PKAAKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150GFJ3 | 1e-176 | A0A150GFJ3_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3343 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 6e-25 | NF-YC family protein |