PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ48251.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | SBP | ||||||||
Protein Properties | Length: 230aa MW: 24354.3 Da PI: 6.6696 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 23.8 | 1.2e-07 | 2 | 40 | 36 | 74 |
TTEEEEE-TTTSSEEETTT--SS--S-STTTT------- CS SBP 36 sgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrr 74 +g++ rfC qCs+f ++s f+ ++r+C ++L++ + r KXZ48251.1 2 DGRSVRFCDQCSKFEDISLFEGSRRTCNDKLERTRQARS 40 67889**********************999987654442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 11.451 | 1 | 42 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.8E-7 | 2 | 42 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 9.7E-7 | 2 | 28 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.8E-9 | 2 | 39 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDGRSVRFCD QCSKFEDISL FEGSRRTCND KLERTRQARS DKRRRLSEHA RRAALRLQAR 60 RVAPYSGASI AGKRSHSGLY GLYGEDDCDD DEDWELEASG VLPLRGPPSK RTRELSPFAL 120 PLAHLPLGPL PPLPVNCLAA DADGLQAEGE EGRQDALKTL VGAFRSAVSS SGGRGLADVA 180 ALLLAELDAA ANQQGVQLRP VEASAGAAHE APLAAGGGPL PITSAHGSPL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 45 | KRRRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150GEG3 | 1e-161 | A0A150GEG3_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |