PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ48163.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

C2H2

Protein Properties

Length: 534aa MW: 57338 Da PI: 8.3831

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ48163.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	368	391	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp Cg+++++ ++L +H + H KXZ48163.1 368 HRCPLCGRRCKDAEQLAKHFKQlH 391 79*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0053	368	391	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.806	368	396	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	370	391	IPR007087	Zinc finger, C2H2
CDD	cd06167	0.00654	441	515	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MNIPAMHRAA DAILDSLLDL NGVAYYKGAK FIRGHWEGES CISQELRALG PNEFHDFDFD 60 SYRPSSPFPS DQPSHEPTTG TSAPKTSAGK LRLRRYAAER DAAEAAEAAA AATPRRPRTG 120 VAAEVPPEAS GTGREDPRVG RAESDGSSRR QRRRQLFQDA DEEGAPEGRT RAVVHGQPSR 180 DAAAATSPES SATDGDVGAG GSTDAGPQQG MSRRRQHQHQ RGRQPAEASA AAAGAEAEQQ 240 QGWRLHEGAG ALDSGMQTGA ATASAAAGPR TEPAVSSGGG AGLPGSPAPA RPTGPVYVLW 300 DLDNKYPIVL DHTRVVENLR RVLGQFGAVA EIRAFCNYQT LNHVPQLWGV AMELGMEHPL 360 DAEQPEEHRC PLCGRRCKDA EQLAKHFKQL HEREHKKRMS SSAPKKVVKR YMESEKREKY 420 VQAAKVALPR QARGFNLEGI LKAAGVAVTP VQMGPQRADV ALEEAASQLL RSVHAPLPSS 480 DPGSRPVLAI VSDDRGFEPL LKLFESRGWR TVSVCNGAVR GAGAQVHWAK VVDL

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MNIPAMHRAA DAILDSLLDL NGVAYYKGAK FIRGHWEGES CISQELRALG PNEFHDFDFD  60
SYRPSSPFPS DQPSHEPTTG TSAPKTSAGK LRLRRYAAER DAAEAAEAAA AATPRRPRTG  120
VAAEVPPEAS GTGREDPRVG RAESDGSSRR QRRRQLFQDA DEEGAPEGRT RAVVHGQPSR  180
DAAAATSPES SATDGDVGAG GSTDAGPQQG MSRRRQHQHQ RGRQPAEASA AAAGAEAEQQ  240
QGWRLHEGAG ALDSGMQTGA ATASAAAGPR TEPAVSSGGG AGLPGSPAPA RPTGPVYVLW  300
DLDNKYPIVL DHTRVVENLR RVLGQFGAVA EIRAFCNYQT LNHVPQLWGV AMELGMEHPL  360
DAEQPEEHRC PLCGRRCKDA EQLAKHFKQL HEREHKKRMS SSAPKKVVKR YMESEKREKY  420
VQAAKVALPR QARGFNLEGI LKAAGVAVTP VQMGPQRADV ALEEAASQLL RSVHAPLPSS  480
DPGSRPVLAI VSDDRGFEPL LKLFESRGWR TVSVCNGAVR GAGAQVHWAK VVDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	153	RRQRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A150GEF9	0.0	A0A150GEF9_GONPE; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	6e-22	C2H2-like zinc finger protein