PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ47992.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | C3H | ||||||||
Protein Properties | Length: 635aa MW: 68226 Da PI: 6.7346 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.4e-07 | 98 | 119 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 elC +fa G C +Gd C+F+H+ KXZ47992.1 98 ELCTNFAL-GRCTFGDGCRFSHD 119 8*******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.047 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-5 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-4 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 97 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 98 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 54 | 131 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.024 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.20.20.70 | 5.9E-61 | 270 | 514 | IPR013785 | Aldolase-type TIM barrel |
CDD | cd02801 | 8.80E-75 | 270 | 510 | No hit | No description |
SuperFamily | SSF51395 | 5.49E-51 | 270 | 588 | No hit | No description |
Pfam | PF01207 | 1.6E-44 | 322 | 516 | IPR001269 | tRNA-dihydrouridine synthase |
PROSITE pattern | PS01136 | 0 | 356 | 374 | IPR018517 | tRNA-dihydrouridine synthase, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002943 | Biological Process | tRNA dihydrouridine synthesis | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0017150 | Molecular Function | tRNA dihydrouridine synthase activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MEPENQEEKN LLTAEQMLER NIVPVKAEYL VRKAPAHKRE QSQPAGAAEP AGAAPEAATE 60 GAAPGTANDK GRDKEKEQTK SKSRKQMRKD VRAGRPPELC TNFALGRCTF GDGCRFSHDL 120 AAYLRSKPAD LPGACPWAAL GVPCPYGVTC RYARKHTADD EQHRLLRETV PAPPEEPAAG 180 EGAEPSAPAS GGSPSGDADG GGSGGGLPSG PLPLPAPSSI EKETNFMSKE TQTQLWKNRY 240 DFSVADEILK NMGLRISFKH QPKPMPGGAR RVCKSLGVDV TCGEMALATE PPAGGGGWGS 300 GGWGGGAVGQ GQASEWALLK RHPCEDLFGV QVCGGFPDAL ARCGQLISES VSVDFMDINM 360 GCPIDLVCDK SAGSALLRQP RRIEQIVRAT SAALGETPLT FKTRKGFNDG EDVAHTFLHK 420 AGEWGAAAVT LHGRTRQQRY SKLADWEYVK SCAGACSAAG LQLLGNGDVF SFTDWNEHMG 480 ESGNGLASLM IGRGALIKPW IFTEIKEQRH WDISASERLD LYRSFCSAGL EHWGSDGRGV 540 ETTRRFLLEW LSFTCRYVPV GLLEVLPQRM NHRPPTFVGR SDLETLLGSD DPQDWIRISE 600 MLLGPPPAPL SFAPKHKSSA YGPPGAASEL DMARG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ei9_A | 5e-17 | 330 | 506 | 88 | 257 | tRNA-dihydrouridine synthase B |
6ei9_B | 5e-17 | 330 | 506 | 88 | 257 | tRNA-dihydrouridine synthase B |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002951897.1 | 0.0 | hypothetical protein VOLCADRAFT_105302 | ||||
TrEMBL | A0A150GDS7 | 0.0 | A0A150GDS7_GONPE; tRNA-dihydrouridine(47) synthase [NAD(P)(+)] | ||||
STRING | XP_002951897.1 | 0.0 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP587 | 7 | 7 |