PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ47943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | WRKY | ||||||||
Protein Properties | Length: 521aa MW: 55880.3 Da PI: 7.8579 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.5 | 1.5e-29 | 50 | 107 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYG K vkgs++prsYY+C++agC +kk vers+ d++v+ + Y+geH h+ KXZ47943.1 50 SDGWQWRKYGEKLVKGSPNPRSYYKCSHAGCLAKKIVERSEADGTVLSTEYKGEHCHP 107 7********************************************************7 PP | |||||||
2 | WRKY | 103.4 | 1.2e-32 | 235 | 293 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYGqK+vkgs++pr+YY+Ct+ gC v+k+vers ed++ +++tYeg+Hnh+ KXZ47943.1 235 MDDGYRWRKYGQKQVKGSPYPRAYYKCTHVGCLVRKHVERSGEDENRFIVTYEGQHNHK 293 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-27 | 35 | 109 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.449 | 44 | 109 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.5E-25 | 47 | 109 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-33 | 49 | 108 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-23 | 51 | 107 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.8E-32 | 225 | 295 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-28 | 229 | 295 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.592 | 230 | 295 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-38 | 235 | 294 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-25 | 236 | 293 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MDSALQRPSA RLPLPIPART EAANAVEASR LAKREPEPRV GTGKQSVANS DGWQWRKYGE 60 KLVKGSPNPR SYYKCSHAGC LAKKIVERSE ADGTVLSTEY KGEHCHPAPL TIKTSRFKPK 120 PKAEAQLPVP QLVEPPQACS LPLPLPPVPV GMLPLSGGGM LPIPDTLRSD FPAYAEEAER 180 ELQSNSNSPD LGPSAKRQRT EAGAMRTRAA ADEDDEASAG PTSTSTQRIV DASNMDDGYR 240 WRKYGQKQVK GSPYPRAYYK CTHVGCLVRK HVERSGEDEN RFIVTYEGQH NHKPPTTGSR 300 RRSPKETEEE YEGEEAEEDS SQPTSPQRGG QQLHVQPQAG SRAQQAQLQA QQQAQQQAQQ 360 QAQQQAQQQA ANNNAHPLAD LGHLQHLQVA TSAALQHAAL SGALPIVSYN SLTNEALASL 420 GLSSGALQGM EALNALNLAS VGNLADLTNL LRQHTQIDMA LAAQAQAMDA WDPLACLITP 480 RPNVSPPGGL GLPAQGVPSA GTGRQNKAAL VSAKQASTAE A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-25 | 51 | 295 | 1 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-25 | 51 | 295 | 1 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001692342.1 | 1e-174 | WRKY family transcription factor | ||||
TrEMBL | A0A150GDT5 | 0.0 | A0A150GDT5_GONPE; Uncharacterized protein | ||||
STRING | EDP04292 | 1e-174 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP469 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07100.2 | 4e-43 | WRKY DNA-binding protein 26 |