PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ47614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | SBP | ||||||||
Protein Properties | Length: 849aa MW: 82833 Da PI: 6.4513 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 93.6 | 1.9e-29 | 568 | 645 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C+vegC a l +++y++r+k+Ce+h k ++vl g+ +rfCqqC+rf +sefD ekrsCr L++h +rr k+++ KXZ47614.1 568 TCHVEGCGASLVGLRDYYQRYKICEFHLKVNSVLKGGVPHRFCQQCGRFQPVSEFDGEKRSCRVMLQRHCNRRAKQKQ 645 6************************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54695 | 3.22E-13 | 17 | 113 | IPR011333 | SKP1/BTB/POZ domain |
Gene3D | G3DSA:3.30.710.10 | 7.4E-17 | 18 | 115 | No hit | No description |
Pfam | PF00651 | 1.0E-13 | 18 | 115 | IPR000210 | BTB/POZ domain |
PROSITE profile | PS50097 | 12.061 | 20 | 87 | IPR000210 | BTB/POZ domain |
SMART | SM00225 | 6.5E-10 | 20 | 117 | IPR000210 | BTB/POZ domain |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-27 | 563 | 630 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.085 | 566 | 643 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.11E-26 | 568 | 646 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.3E-27 | 569 | 642 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 849 aa Download sequence Send to blast |
MPVLQLDSRG AAEAPPRELS DLTLLCPDGR AIHCHSVILA AASRRFASVF KQAGWTPGQQ 60 MPVKGVDSDA LETLVRAFYT SECPLDLDRI PAIYDAAVKL EVPSLAPSLE QFVSTALTAE 120 SALGFLQRCL GLGLGALADA ALEWIRSRVA EVVPSPEFRS CQLDTAALVC KNLAQRSQLV 180 GLQAAVSWLS ALPSRAALLL PFAELTGLDP EAIHAVAASG ATLNNVTAAL GLTDGGAGGR 240 QHGLPHGLTQ SLVASLGLDL TGHGGSGGFG GPPLVPSLDL GMQPGGMGGS GGHGGGGGMG 300 PLGTDQQSLL GLGGGLGLGL APGGGPGDGG GGVVPVLQLL APMGRDMRQQ MLLMPPGVEG 360 GAAVGLQSLL MQQHGAGGND GKPGGKAGGV GLGMGFGLDA LAEAAQDAEQ AAARRGGKAG 420 PGGGGGLGVE RSGSAASTTS DMSGEGQNHA RPLPGGGGRA AGAVGGGRRK RPASASDEDE 480 DYEPGASGGG VGRGGGSRAR TQAAYEQMAP SFDGMGGGGA AGAQDDMNSG GGGGSGGGGD 540 AGGGGGALTE SSPPVLMTGR RQPAVKGTCH VEGCGASLVG LRDYYQRYKI CEFHLKVNSV 600 LKGGVPHRFC QQCGRFQPVS EFDGEKRSCR VMLQRHCNRR AKQKQELAEV LAQRLGEKQL 660 QYLTSLPADG PGSESDGGGG GGSGRSGGRA GGRGGSRSGL PPGLSSPPSK QALMEAVARQ 720 QALAQQQLLG LGLANEGTLA AVVSALAAAN EAGGDGAGGR GALGGPLSGA LGGALGLAGL 780 TGGPKGGPSV ELDKAVAEAT AAAAAGPQPA LGGGAVAALL ALPAAGAGSG TDAVGSGGDA 840 GGGVATKAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-17 | 569 | 642 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 415 | 423 | GGKAGPGGG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150GCP8 | 0.0 | A0A150GCP8_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 5e-20 | squamosa promoter binding protein-like 9 |