PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ46859.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family MYB
Protein Properties Length: 725aa    MW: 75183.9 Da    PI: 6.9294
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ46859.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.5e-103888145
                     TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwq 45
                     r +WT+ E   l +av  l +g       +W+ +ar ++ gRt+kqc+++w+
       KXZ46859.1 38 RRAWTKIEKNSLEHAVSALAPGaanaddiDWRVVARAVP-GRTAKQCREKWL 88
                     679*****************99*****************.***********7 PP
2Myb_DNA-binding30.31e-0998140246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+W  +E+  l+ a+ + G++ W+ Iar+++ +R  + +k+rw++
       KXZ46859.1  98 GAWALQEEYVLALAHSRVGNK-WAEIARYLP-TRPINRVKNRWHS 140
                      789******************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.0363391IPR017877Myb-like domain
SuperFamilySSF466891.76E-1836138IPR009057Homeodomain-like
SMARTSM007173.5E-93793IPR001005SANT/Myb domain
PfamPF002496.8E-93888IPR001005SANT/Myb domain
CDDcd001672.19E-74087No hitNo description
Gene3DG3DSA:1.10.10.601.9E-124097IPR009057Homeodomain-like
PROSITE profilePS5129414.35292146IPR017930Myb domain
SMARTSM007171.8E-596144IPR001005SANT/Myb domain
PfamPF002497.4E-998140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-1398141IPR009057Homeodomain-like
CDDcd001671.12E-499139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MCKGHKVSED NFHTGFQDLR WGCNDSLKQI GQLKKRSRRA WTKIEKNSLE HAVSALAPGA  60
ANADDIDWRV VARAVPGRTA KQCREKWLSD LRPGIDQGAW ALQEEYVLAL AHSRVGNKWA  120
EIARYLPTRP INRVKNRWHS ARRATEPHKV DTFLHIYTRL VRRDKKSEDG GCRGGGRKGK  180
RAREEEEEDE EEEEEEEEDG ATGGGNAAAI EAAKEQYALL AAKSLEVVPL ADFEVGLDYY  240
LRPGGDKEQT TANGNGNDNG KRHGIPCRKR GGGRRRTLPV RTVAAGGGGG GGGNDASGGG  300
DGGGGGGGGS GAEIETWVAG GGEREAAAAA ASKGSGARGK AGCKGSAGKT ARGGSHSPRT  360
ATATANALNV KAGAEPADPV HEPPPRAYKP SGSALGTGGG GGGALGQRTE SPQHPAPFAL  420
APYGMPGPLR EALDAAERIV RPQGPQGPQG PQRPHGPACL GMTGQRLGER DEQPARHGDG  480
SDGGDGRNAD NCGCGGGDDT DEESEWLRPV AGAQWSPGSE GSQGADSAFG GGAMRASWSG  540
GAFFSAPSFW DTREIENYFA AELGQPPPGH EATDPCHLAP QQQPLRHVIS GLGRKSVCHG  600
GLRASPSALD TNEMEDYIDA QLLAPGREAN GPCHSMPQQE PPPPLRPATS APATFALAAL  660
SEPGLVPQQH HGLHWAMTAP SGMGHQAGGG GAGAGAGGAY GAAAFASAPP QPPQHMMPPP  720
LPPPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-19411437102C-Myb DNA-Binding Domain
1msf_C6e-19411437102C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296309SGGGDGGGGGGGGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150GAJ60.0A0A150GAJ6_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1143523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-20myb domain protein 3r-4