PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ46292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | SBP | ||||||||
Protein Properties | Length: 1653aa MW: 165317 Da PI: 7.1813 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 73.7 | 3.2e-23 | 18 | 90 | 5 | 74 |
TT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT--...----- CS SBP 5 egCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakh...nerrr 74 gC+ l++ k y++r+k+Ce h k+p++ ++g+ r CqqC+rfh+ls f+ +kr+Cr +L++ errr KXZ46292.1 18 VGCSRSLQNSKLYYQRFKLCEDHLKSPAISIDGVLSRLCQQCGRFHDLSAFEGKKRTCRAQLDRIrrtKERRR 90 58**********************************************************9986411133444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 19.11 | 12 | 89 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.8E-24 | 18 | 90 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 7.1E-22 | 18 | 76 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.65E-20 | 19 | 89 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1653 aa Download sequence Send to blast |
MAAHQPWDPD DYNWDGIVGC SRSLQNSKLY YQRFKLCEDH LKSPAISIDG VLSRLCQQCG 60 RFHDLSAFEG KKRTCRAQLD RIRRTKERRR VPGSTAANSD SPDYSGEGDR DTLAQAGSTS 120 SGSGEREVRP KRGGRGGGGG GSAAGRSTAS GGDGGVSDPR VGGLLYGSQG LEGGSPLSNG 180 YGVRHLLGVQ ALCAQPFQAN GGGDCGRYDR SVLAPALSPV NLQLQSTGSG QGAAVLVGPA 240 LDMPEGQAAL GPASGGGSGA IQGLLWPMGP DPGVRQGQHG QLLDPMAAYP APAGLRSVSS 300 APPWLGQTLG QLSPSDSRPP APYYFPPEAS GPNKLSTAVP LGAGTGMGVG SAPGLLHAAV 360 VPGLGNGGGG SGDGGTALIE PHALLSQPLW ADYPGLQQQQ QQQQQQQQRL QNQLKLGEAG 420 GGGAGGGRPA AVSAAVVSHN GPHALAAAGH APSSSTAEAM AAAARLGYGG TAGGGGGAPA 480 DMMDAELLRM LEELEDQAAA DGGRDGGRHG ASNGSLGPGP DRDSLAGSAA AQRQQHLGHL 540 PGRENRHDGR PHTTIGALLF SEISGRLAAE NARAGGGGGA GSGSGGIGGG GSNSSAGAGP 600 SGGGSGTGSA RAGALAQMLM PVCSGGSASS CDGEGRSRQQ TGGLLNLSDS PMEVAGGSTH 660 TPELSAAVTA AQPPQFMASG SGGGVTAAAA ARLGPLSAVA ASAEASQLSE FLKKLSESKS 720 SSSGSGTDLM DIYESMLRQG LLNEPYDAGR PGDPSAMAAA AEAFAGGELA AFNGGGGVLM 780 QHLQQLQQQQ AAQAQMIPQH QQEQLQQQAA FLHQQQEQQQ QQQQFPAQPQ HNQHNSHIDS 840 YRQIDNNYPN PPQQRHDQIL QHQQQHHQHQ HQHQQLLREG ALERHISTAC AAAPTHYAAG 900 GGGHGGAVSA GGGAPYVARD AVSRVTLKMM NCLPEELPPA LRSNLQAWVS AGAAAEVLHA 960 CMRPDNELIL EVGELVLRAP PGQTPVLSTW EEAAAAFAVE DGEDDAAGGN DSDAAAVAAG 1020 ARDAPAAATA AAAAAGARPG GGRRLRPTLR GCSLAAARSA SVVSMQISGQ GLCGPGVTLL 1080 ARMGGQRARL ASCKAAAARP AAETVLSVLV EPPRPAGLLV LEARRGRLLG SWWPLVVVPE 1140 PEVAAELNDL ARQEERGVHQ PQLGAGGAGG ATAVSSDWLR AFLIDLGQIL DWTTAKAVRD 1200 DRTASSYGRG GGGVPARPAA GGAMMTSWNS DSEDAEAAAL PTAPEAPATA GPRRRGGSGA 1260 GAAVRSRALA AIREADGNLE RRLSFKACRL LAFSVVRGLP HTAAMIWRLL GPAGLGMPPA 1320 SVCDHALYDG EGLLACAVRS RCTATLASLL PLVAPSWPAR ELSRLGPSGV SPLHLAASLP 1380 GCAAVAGALL VSLPDAPVLW FTHRSAAGAT AAELAAAAAA GGGAAGATLN ALASRLLKAA 1440 MAGPTAATHG WAPPPNAAAA SAIAVRAAAD DAGADVAGDL AAAAGAAPPM PTARAVPTTM 1500 FVAVTPAASW DSGSGSVVST TRRHLSSKMN SEEQELEAGP DSAGGAAGPA PVPAPPASLR 1560 AAGNTPPPAV PSAAALPPSG PAPAASGPSL AAPAPPPAAA SAAAAAAAGP SSQAAQRAAP 1620 SKGGLSSWLK KLVRGGKSKD AEERKGAPPR GQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-14 | 20 | 90 | 16 | 83 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 140 | GGRGGGGGG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150G8W6 | 0.0 | A0A150G8W6_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-15 | SBP family protein |