PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ45840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | SBP | ||||||||
Protein Properties | Length: 360aa MW: 38886.1 Da PI: 8.0212 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 77.4 | 2.2e-24 | 3 | 65 | 13 | 75 |
T--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 13 eakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 k y+rr+ vC +h +a + lv+g++qrfCqqC++f ++ +fD+ krsCr++La+h rrr KXZ45840.1 3 MEKAYYRRYNVCATHLRALELLVDGRMQRFCQQCGKFQDVADFDDIKRSCREQLARHSLRRRI 65 5699********************************************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 20.751 | 1 | 66 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-23 | 3 | 64 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-19 | 4 | 53 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-20 | 4 | 66 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MRMEKAYYRR YNVCATHLRA LELLVDGRMQ RFCQQCGKFQ DVADFDDIKR SCREQLARHS 60 LRRRIKLSQR RRQEMGGIAD GDDSNSDMDD AAGAVRPAAT KSSAAEPALA RQARQEVRKA 120 VTAPILDLEG GLAGVPLVGE PMESAGPVLQ RLSLKLYGCS PEELMPDTRN RLQAWLGSMN 180 LAMFDLAVRR GCAHLVADVL TAAAPSRVHL PSHAGHQALG FAHPYTGSTE RSGFHCTVSA 240 LSQRDEAFES PEEGGSNSSG GSSSVMHDLP TGAGEVVSPL GSDDEASAMA WLLGGTRACT 300 ANAGRFPLSA LLQQLLGPRL GRPSTEYTEP AGGRLVMQLD SKVQRPVWLQ GAPPWRASPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-15 | 1 | 64 | 20 | 83 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150G906 | 0.0 | A0A150G906_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 3e-15 | squamosa promoter binding protein-like 4 |