PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ45686.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family MYB
Protein Properties Length: 957aa    MW: 91064.4 Da    PI: 10.0379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ45686.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-081291847
                     HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++G+++W+ +a+ +  gR++k+c++rw++ 
       KXZ45686.1  1 MHGTKNWSVVASGIK-GRSGKSCRLRWHNQ 29
                     59************9.************96 PP
2Myb_DNA-binding431e-133678145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     + +++++Ed  ++ a+  +G++ W++Ia+ +  gRt++++k++w+
       KXZ45686.1 36 KEPFSEWEDAVIILAHDVHGNK-WAAIAKLLS-GRTDNSVKNHWN 78
                     579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.722130IPR017930Myb domain
PfamPF002491.4E-7129IPR001005SANT/Myb domain
SMARTSM0071717132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-14237IPR009057Homeodomain-like
CDDcd001679.42E-6228No hitNo description
SuperFamilySSF466892.32E-231087IPR009057Homeodomain-like
PROSITE profilePS5129423.4243185IPR017930Myb domain
SMARTSM007175.3E-133583IPR001005SANT/Myb domain
PfamPF002495.1E-123678IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-213885IPR009057Homeodomain-like
CDDcd001678.91E-93881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MHGTKNWSVV ASGIKGRSGK SCRLRWHNQL NPDVKKEPFS EWEDAVIILA HDVHGNKWAA  60
IAKLLSGRTD NSVKNHWNAT LKRKVNTNTL RNRFLKDRCN LQWLLDHAEL DSSRHKDPAK  120
TEISINGNWA GKAVRRGQTM QHGGSRSRRS RQVDSGSGSD EPDDQDIGGD DDGGDDDSSG  180
RGTTGAATAA GPGPGSLNTM AAALQRLSSN LAMQMGPGGL GTLDGLGSLG PGGLGVVPGG  240
PMGIGGSGGG LLGPGLGLGG LGGLGPMGGL LGMGNTANGG EAGGGLGRTN SAAAALAAAA  300
AAAAAGGLTL PPGPLAPSGG SRQIPALDLP PLSLGPTGVG ISGGSTGTRF DDPSAGGGGG  360
RGGGGGSEPS GSLSHAGQAP PPLRRPQPLA PASHPLDIGS IASASSSGAH SGLGLGDLGG  420
PGSRPGFRGH AVGGGGAGGG AGQAQPLSLT GSGGGGGGNG MASASEMAMF MALPEATRMC  480
LVELARLAGP SALPLLEAER ERDRMTGPAA AGGSGLGSGS CGAPRPGSSG SGHGGEGEGL  540
GSPLPLQLST GATAQPQRMQ QQDRAMGNGG LPGPMGYGGG AGGGMRISGA GGGADLSSGL  600
GAPRSAQQLF DLLGADPAVQ FRQLQQQQPL RRAGSGGFAG LGVGGQAGLP LGRRGAGDNG  660
LGLPTAGSLG AGLGMDEPLG IAGLIGVGNG LGGSGLGPRA APARPNVGGG GGVGSSLGHD  720
AADLLLRKLQ HNSAGGGSGA GAGGGLNGPL GGLAALGGLP SLGSGGPGGG GALGGFGGLS  780
GNGLNGGPGG ALGGGGGLSG GHGLGGMGGL ASRQPDLAGR GLGLDRGAGG GAGALGLNLD  840
RIKAGLGGPA NDGGSGMSQA ELRMLQPLLA RGMAQELGGG RSSGPGLGSL GGLGLSLGAG  900
RGGGLSGLQA SARELGSTLQ QQAALKQLAA DPTLFRGLSE ELAHLLSAVD HPAAASF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3428725110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358365GGRGGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150G7420.0A0A150G742_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-34myb domain protein 109