PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ44734.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 842aa    MW: 83194.1 Da    PI: 7.9681
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ44734.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06265284626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C+++ + G+C +Gd C++aHg
  KXZ44734.1 265 CPDYKQ-GFCIRGDVCPYAHG 284
                 ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.4E-73158IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-796151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029710.94998164IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.2E-698144IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.89798130IPR002110Ankyrin repeat
PROSITE profilePS5010311.967259286IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018259285IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4265284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4291323IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.822294318IPR000571Zinc finger, CCCH-type
SMARTSM0035616294317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MAHPNEASEV IGHYLVPAHG RPAQPLLHES TSLFQDVVSD KLSTVESAVE ADADKLNQFF  60
LILHWASDVK GASGPGGEPA AESGDVGAAV GKASVMVKQR TLLMIAAHAG SLRVLAYLLA  120
RGAEPSRKSP DGLSAYDMAV AGESSQAATA IAMMKDADSH PSSSTRSSST TETHSYSGTD  180
ALRSNSRQLS QGCAPDMADA DGSIYSTTDL TRPEYSTDDF RMFNFKVLRC SKRHAHDWRA  240
CPFAHPTENA RRRDPREFKY CALACPDYKQ GFCIRGDVCP YAHGVFECWL HPSRYRTQLC  300
KDGANCHRPV CFFAHSLPEL RAPTYTWVPG PADLTRPAMS LASVSGGAAA TGLPASAAAM  360
VFNSGSTGGG GANGSSPVAP VEAEARALLS HSSSGIPALG SGSDANSVGA PASCGSPRAG  420
TGNGSSATNS GSSSAALTNG NGGNSSTGSM VALMMASGGG VGGASAASAL MGGGGGVGNV  480
GSHGIGSSAG SSSGNLGSPS PSGSGSSKEG GVGGGGGSGH GMSGKGSPAP SSGTGSSNGN  540
GQTYSGGGGG GGKLGNLNLT QPNAAAGMLG FTAPRMSNAF ARRHGLNPKD NPMLNLQKIA  600
LQTHQQPMPN GTSGGSGVAG GFQATDNATG GAFRNHGGVN GGGGVTLQVA GGSRGGGINN  660
TGAGGYNGAG GGHRLHASAA VAAAAAAATG AASQGFGSMP LGGPGGAGVF GVSPMQMHLP  720
MHAAAHLGGN PTDPSLLAAQ LAALNLQQQQ QVQQQRQQQV QQHLGIGMGI NMTSGAAAAA  780
AAAAAATMGA AGIGHGPMPY MAGSPHPALI HAGMYGPGAA GGMYDHTQQH LIAAMGGGQA  840
EV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002958507.11e-148hypothetical protein VOLCADRAFT_99797
TrEMBLA0A150G4I20.0A0A150G4I2_GONPE; Uncharacterized protein
STRINGXP_002958507.11e-147(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.12e-49CCCH-type zinc finger protein with ARM repeat domain