PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ44247.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

SBP

Protein Properties

Length: 1130aa MW: 117094 Da PI: 6.3746

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ44247.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	107.9	6.6e-34	90	166	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC +dls k y++r++vCe h k + +v+g+ rfCqqC+rf el+efD +krsCr rL +hn+rrrk+ KXZ44247.1 90 VCQVEGCGHDLSVEKGYYQRYRVCEPHMKLLSLVVNGKPSRFCQQCGRFQELTEFDGSKRSCRARLLQHNARRRKRD 166 6*************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.6E-30	85	152	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	26.53	88	165	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.75E-29	89	167	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-30	91	164	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.32E-5	862	984	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.1E-4	866	984	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	8.8	902	984	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010468	Biological Process	regulation of gene expression
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1130 aa Download sequence Send to blast
MADVFNAAFS AEPHAQWPAG RFAWDPSQLH ALPSPESGSS GDPFLEAGHR DQSLGPVPIG 60 WDEAPSNSPG PAPGAGKETK ASRAPKGPLV CQVEGCGHDL SVEKGYYQRY RVCEPHMKLL 120 SLVVNGKPSR FCQQCGRFQE LTEFDGSKRS CRARLLQHNA RRRKRDPYDT CRKEQTNRKS 180 KSAHPWSGSS DDAEPASRGS VDVSHGVDKA VASYGMDGAV DQGISVHSLG PKVSSSSAAP 240 AWQGGLGSMG VMPMDVPTTA PLPQSILQPL SGQPLSGQPV SGQPLSAGQP LPGQHQSAMA 300 NKGYVRWQAA SAESLDPLDD VLDSILGTEM DYLDDPGVPV PSRATEARDR LASAGVTVNP 360 AFLPGACLGG LAAQPAPQTA DQMWMGSMTS SPAQSGVVLN SNNSFTSGVP VSGPWQQGVG 420 GGVAGLDLAA QQRLKQQRIL QQQQMMAQQQ QMAATARPSI NSGLSIMDTY MGVVSSSTAG 480 GLAGPVSGQG YGPRSSWASA NPSGTPELMS GSGVFGGSGD VGMSQATASA AASPFPAAPR 540 PGAQSSFDLA RRLVASGGAA AQYKGEDLMV RVSIKIANCT PDQLPPDLYQ RLRNLCSAAD 600 ATVLVQTHDE VSLWPAGAPA SAAPQHSVRI ADLESAHSLP TIAYVSPAVH VDGTGCASLY 660 VFGTGLARAG VEFFARMQGG YVPVEVQQLA AGGVALPSLA EDTDFGKTAA AALRHVEALK 720 SAGRSAEDVI MIRVRGTPGT GLLLLEAQAG PLLSNWRPCL LSTNAAIAAE LSGWGLAALR 780 RGAAAMDSLE SFIIDFGRVL DKRSYERPVP PPAVLTSTAV SKTIHEEESD NEEENGDEVF 840 ADAVSGSIEG EGGVTLELVC VCERLLGWAA DAGLARVSTF LMSALLQYGQ SAQAILEAPY 900 ADGLSVLHRC ARSGNPTAVA ALANWAASCG VHAEWGGIGA LGVSPLHLAA LLPRTWAALS 960 MLPEARAFWA ISRATADGAS PVHLQRALLR VLPRDAAAHG LAELFAAPKP RAVVRPPVAK 1020 HVEASPLSVS SRHVNQDAPL LSVAPDKASG GFAMAPLLAS VLAATLAAAL LAPRALQMPA 1080 SDAPDAVIRT EFVGIALLLL SVAGFFLPGK MSAAMLLSQV HPASTCIPTP

Sequence ? help Back to Top

Protein Sequence Length: 1130 aa Download sequence Send to blast

MADVFNAAFS AEPHAQWPAG RFAWDPSQLH ALPSPESGSS GDPFLEAGHR DQSLGPVPIG  60
WDEAPSNSPG PAPGAGKETK ASRAPKGPLV CQVEGCGHDL SVEKGYYQRY RVCEPHMKLL  120
SLVVNGKPSR FCQQCGRFQE LTEFDGSKRS CRARLLQHNA RRRKRDPYDT CRKEQTNRKS  180
KSAHPWSGSS DDAEPASRGS VDVSHGVDKA VASYGMDGAV DQGISVHSLG PKVSSSSAAP  240
AWQGGLGSMG VMPMDVPTTA PLPQSILQPL SGQPLSGQPV SGQPLSAGQP LPGQHQSAMA  300
NKGYVRWQAA SAESLDPLDD VLDSILGTEM DYLDDPGVPV PSRATEARDR LASAGVTVNP  360
AFLPGACLGG LAAQPAPQTA DQMWMGSMTS SPAQSGVVLN SNNSFTSGVP VSGPWQQGVG  420
GGVAGLDLAA QQRLKQQRIL QQQQMMAQQQ QMAATARPSI NSGLSIMDTY MGVVSSSTAG  480
GLAGPVSGQG YGPRSSWASA NPSGTPELMS GSGVFGGSGD VGMSQATASA AASPFPAAPR  540
PGAQSSFDLA RRLVASGGAA AQYKGEDLMV RVSIKIANCT PDQLPPDLYQ RLRNLCSAAD  600
ATVLVQTHDE VSLWPAGAPA SAAPQHSVRI ADLESAHSLP TIAYVSPAVH VDGTGCASLY  660
VFGTGLARAG VEFFARMQGG YVPVEVQQLA AGGVALPSLA EDTDFGKTAA AALRHVEALK  720
SAGRSAEDVI MIRVRGTPGT GLLLLEAQAG PLLSNWRPCL LSTNAAIAAE LSGWGLAALR  780
RGAAAMDSLE SFIIDFGRVL DKRSYERPVP PPAVLTSTAV SKTIHEEESD NEEENGDEVF  840
ADAVSGSIEG EGGVTLELVC VCERLLGWAA DAGLARVSTF LMSALLQYGQ SAQAILEAPY  900
ADGLSVLHRC ARSGNPTAVA ALANWAASCG VHAEWGGIGA LGVSPLHLAA LLPRTWAALS  960
MLPEARAFWA ISRATADGAS PVHLQRALLR VLPRDAAAHG LAELFAAPKP RAVVRPPVAK  1020
HVEASPLSVS SRHVNQDAPL LSVAPDKASG GFAMAPLLAS VLAATLAAAL LAPRALQMPA  1080
SDAPDAVIRT EFVGIALLLL SVAGFFLPGK MSAAMLLSQV HPASTCIPTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-22	81	164	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A150G317	0.0	A0A150G317_GONPE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-25	SBP family protein