PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ44233.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family MYB
Protein Properties Length: 366aa    MW: 39000.8 Da    PI: 7.8336
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ44233.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.91e-0710511548
                     HHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 15 avkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                     +v ++G g+W+ Iar ++         gR +kqc++r++ +l
       KXZ44233.1 10 LVDEYGEGNWSVIARQLNtalgkpadSGRIGKQCRERYNHHL 51
                     6899**********************************9886 PP
2Myb_DNA-binding52.41.2e-165799145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +++WT eE+ llv a+ ++G++ W+ Ia+ ++ gRt++ +k++w+
       KXZ44233.1 57 KDAWTDEEETLLVAAHLRFGNR-WSDIAKVIQ-GRTENAVKNHWN 99
                     689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.9553IPR001005SANT/Myb domain
CDDcd001671.14E-5751No hitNo description
PROSITE profilePS500906.981051IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-161059IPR009057Homeodomain-like
PfamPF002493.3E-61050IPR001005SANT/Myb domain
SuperFamilySSF466894.9E-2337105IPR009057Homeodomain-like
PROSITE profilePS5129425.21252106IPR017930Myb domain
SMARTSM007176.5E-1556104IPR001005SANT/Myb domain
PfamPF002491.7E-145799IPR001005SANT/Myb domain
CDDcd001671.39E-1159102No hitNo description
Gene3DG3DSA:1.10.10.601.0E-1960105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQDLRRDQLL VDEYGEGNWS VIARQLNTAL GKPADSGRIG KQCRERYNHH LRPDIKKDAW  60
TDEEETLLVA AHLRFGNRWS DIAKVIQGRT ENAVKNHWNA TLRRKDGDKC GSRGGSVPQS  120
CVLKDYMIRI SLLPGAAALQ GHGAAAVPLH PVEAKQAAPP PLPILLRDHG PAEDFLREHS  180
AGASEEQLVP RAAPGEAKPP APHRAPSPSS SSSTHDLPHA PVVAPGSALP SLQPSAAGAR  240
KRPRIITFAA VPNMRPRLAA TAQPHAGPLR PAAPAGLPPH RTGVPAADGP DAPTSSFEQG  300
RSGYHSHAKF GWASDSAEES LHASPVSERF ERFNDEDGVD VDAAAGVSEF QAAEIMLALK  360
SIAGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-331010518104C-Myb DNA-Binding Domain
1msf_C9e-331010518104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150G3410.0A0A150G341_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.11e-35myb domain protein 64