PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ43735.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family B3
Protein Properties Length: 324aa    MW: 32897.3 Da    PI: 6.3643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ43735.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17113211198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k+lt sdv+  gr+v+pk+ ae++  ++++++++t++ +d++gr++++k ++  +++s++y+l+ G  e  +  gL++gD++vF   ++ +++lvv 
  KXZ43735.1 113 FEKALTASDVSGGGRVVVPKSIAEQYfpKLEQPSGVTISATDLDGRTYTFKWRFwvNNSSRMYLLE-GAGELHRNYGLEVGDVMVFA--QKPDGSLVVA 208
                 99**************************99999*******************98756666666666.********************..5688888988 PP

                 EE- CS
          B3  96 vfr 98 
                  ++
  KXZ43735.1 209 GRE 211
                 776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-25111218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-21111209IPR015300DNA-binding pseudobarrel domain
CDDcd100176.17E-22112204No hitNo description
PfamPF023625.0E-14113210IPR003340B3 DNA binding domain
SMARTSM010194.7E-13113213IPR003340B3 DNA binding domain
PROSITE profilePS508639.897113213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDVGAPSLPA NTAPSAAAGF LHPAALAFGP PSGLQLPAAL KLEPGLQGSF PPDSQHLGGA  60
GGGGGGASPT ARLGGDGLPG MAAGGVPDFM MGPEAMAAAL AARMAASGAS IIFEKALTAS  120
DVSGGGRVVV PKSIAEQYFP KLEQPSGVTI SATDLDGRTY TFKWRFWVNN SSRMYLLEGA  180
GELHRNYGLE VGDVMVFAQK PDGSLVVAGR EASKPSAGPS CGRKRKSVTP GLGVGVGVGL  240
HDVRARIRAE EPPSLAVLDM EAPSDGVFRA LVTHRSGGPV QLGVALARNN RWTATLDLAG  300
EPYQAFFDTK EDAVEALAAA GACP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fas_A1e-231122148111B3 domain-containing transcription repressor VAL1
6fas_B1e-231122148111B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001693653.13e-80predicted protein
TrEMBLA0A150G2J80.0A0A150G2J8_GONPE; Uncharacterized protein
STRINGEDP089071e-79(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41131011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.16e-24HSI2-like 1