PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ43584.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | SBP | ||||||||
Protein Properties | Length: 260aa MW: 27247 Da PI: 8.869 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 55 | 2.1e-17 | 30 | 105 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv++C+ +ls++ e ++ +C+ h a++v++ g+ qrfCqqC+++ l+ef+ ++++Cr+r + +rr++ KXZ43584.1 30 VCQVDNCKRQLSSCSEEQKCLLICDSHYGAAEVTHGGTLQRFCQQCGHMQPLEEFEAGQHACRSRCQLAARRRKRG 105 6****************************************************************99998888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.6E-16 | 27 | 92 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 17.452 | 28 | 105 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-14 | 30 | 105 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-17 | 31 | 104 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MIKNLSPVRQ AAAPIPANNF SNAATAPRCV CQVDNCKRQL SSCSEEQKCL LICDSHYGAA 60 EVTHGGTLQR FCQQCGHMQP LEEFEAGQHA CRSRCQLAAR RRKRGRKEGE DFAVDEGEAA 120 VAAASTQDAP GGVPPKPLRK VASAGGANPL YAASAQQQRN RDRVTRRLTD DTGETTSSSM 180 CSGGGGPTTA GGACALSAPV PVPVMQHRYV AATGAPPSAF LLLRRALAAA VEVQVWMAVR 240 TPVPARKPCA LAPAVALAFA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 107 | RRKRGRKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150G179 | 0.0 | A0A150G179_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 8e-15 | squamosa promoter binding protein-like 1 |