PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ43384.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | MYB | ||||||||
Protein Properties | Length: 784aa MW: 81774.1 Da PI: 7.4886 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.7 | 1.5e-09 | 24 | 72 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwq 45 +W+ E ++l++av + +g +W +ar ++ gRt+kqc+++w+ KXZ43384.1 24 AWSDGEKLILAQAVSEVMPGaanadniDWPVVARAVP-GRTAKQCREKWL 72 7*****************99*****************.***********7 PP | |||||||
2 | Myb_DNA-binding | 25.9 | 2.3e-08 | 81 | 122 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +g++T E+ l+ a+ ++G+ W++Ia++++ R+++ +k+ w KXZ43384.1 81 KGAFTLKEECVLIMAHSKFGNM-WAKIAKYLP-ARSANAIKNCW 122 799*******************.*********.********966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.1E-6 | 17 | 72 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-7 | 21 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-6 | 24 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-13 | 24 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.339 | 25 | 75 | IPR017877 | Myb-like domain |
Pfam | PF13921 | 6.9E-9 | 25 | 89 | No hit | No description |
SuperFamily | SSF46689 | 8.72E-19 | 55 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.964 | 76 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-7 | 80 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-15 | 83 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.28E-6 | 83 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence Send to blast |
MARKKKCHDA KAQKKHSVKG TNTAWSDGEK LILAQAVSEV MPGAANADNI DWPVVARAVP 60 GRTAKQCREK WLSDLRPGIK KGAFTLKEEC VLIMAHSKFG NMWAKIAKYL PARSANAIKN 120 CWSSRGRAKE LQKVHTLLYL YILLVDVASK EPQEAGRRGK RRREGEDGAA AADNADAVKK 180 AKEEYRELAA AHKLVPLKAF LVDIDHYLSD ADGTSPAMRD PRPEIWIMGR GKSRVPVAGE 240 VDRNRCLPLG HDDDDDDDDD DDEQTTTNGN GSGNDDGQRH EMPCDERAGG RPRAMPPVPS 300 VGPGGGGGGG GNGDGGGNGD SCGAAMAAWN ASEGERKAEA VDEGSAARGK VGRKGSAGST 360 ARDGSHSFRT AATSNASAGA EQAVPLLEPP SGAYHPCVGG AIGTGDSGAL GQQRTESPQH 420 PAPFVFASYG MPGPLREALD AAERTARPQG PQGPQGPQGP GDASFEACLR TLGQRLAERD 480 EQLGRRGGEG GDGGGGGGGQ EGDWLCPLDA ALRGNAREGG RGRESTPGRD LRRGRRASWS 540 GGAFPSPSPP SFWDTREIDA HFAAELGHPL PGSGFGEADH HRDTPQQQCR SDCACGFHAT 600 GCPAAQAAAA TQAWAPAPAP VPGWGRVSAG AFHPQQLAPA LQNQLIQTPP ATAAPSYGSV 660 LPFHSLPGLT APWEPHHQPP PPLRPATSAP APFALAALSE PGLVPQQHYG LHGGMTAAPG 720 VAHQAGGGVA GAGAGGAYAA AAFALAPPQP PQYMMLPPRP VWQHGPRLEV DAIRRARFHA 780 EALM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-19 | 52 | 129 | 27 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-19 | 52 | 129 | 27 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 163 | RRGKRRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150G0L4 | 0.0 | A0A150G0L4_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP11435 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 7e-22 | myb domain protein 3r-5 |