PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ43384.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family MYB
Protein Properties Length: 784aa    MW: 81774.1 Da    PI: 7.4886
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ43384.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-092472345
                     SS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwq 45
                     +W+  E ++l++av +  +g       +W  +ar ++ gRt+kqc+++w+
       KXZ43384.1 24 AWSDGEKLILAQAVSEVMPGaanadniDWPVVARAVP-GRTAKQCREKWL 72
                     7*****************99*****************.***********7 PP
2Myb_DNA-binding25.92.3e-0881122144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +g++T  E+  l+ a+ ++G+  W++Ia++++  R+++ +k+ w
       KXZ43384.1  81 KGAFTLKEECVLIMAHSKFGNM-WAKIAKYLP-ARSANAIKNCW 122
                      799*******************.*********.********966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.1E-61772IPR009057Homeodomain-like
SMARTSM007172.9E-72177IPR001005SANT/Myb domain
CDDcd001671.88E-62471No hitNo description
Gene3DG3DSA:1.10.10.605.5E-132482IPR009057Homeodomain-like
PROSITE profilePS500908.3392575IPR017877Myb-like domain
PfamPF139216.9E-92589No hitNo description
SuperFamilySSF466898.72E-1955125IPR009057Homeodomain-like
PROSITE profilePS5129415.96476130IPR017930Myb domain
SMARTSM007172.8E-780128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-1583125IPR009057Homeodomain-like
CDDcd001672.28E-683122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MARKKKCHDA KAQKKHSVKG TNTAWSDGEK LILAQAVSEV MPGAANADNI DWPVVARAVP  60
GRTAKQCREK WLSDLRPGIK KGAFTLKEEC VLIMAHSKFG NMWAKIAKYL PARSANAIKN  120
CWSSRGRAKE LQKVHTLLYL YILLVDVASK EPQEAGRRGK RRREGEDGAA AADNADAVKK  180
AKEEYRELAA AHKLVPLKAF LVDIDHYLSD ADGTSPAMRD PRPEIWIMGR GKSRVPVAGE  240
VDRNRCLPLG HDDDDDDDDD DDEQTTTNGN GSGNDDGQRH EMPCDERAGG RPRAMPPVPS  300
VGPGGGGGGG GNGDGGGNGD SCGAAMAAWN ASEGERKAEA VDEGSAARGK VGRKGSAGST  360
ARDGSHSFRT AATSNASAGA EQAVPLLEPP SGAYHPCVGG AIGTGDSGAL GQQRTESPQH  420
PAPFVFASYG MPGPLREALD AAERTARPQG PQGPQGPQGP GDASFEACLR TLGQRLAERD  480
EQLGRRGGEG GDGGGGGGGQ EGDWLCPLDA ALRGNAREGG RGRESTPGRD LRRGRRASWS  540
GGAFPSPSPP SFWDTREIDA HFAAELGHPL PGSGFGEADH HRDTPQQQCR SDCACGFHAT  600
GCPAAQAAAA TQAWAPAPAP VPGWGRVSAG AFHPQQLAPA LQNQLIQTPP ATAAPSYGSV  660
LPFHSLPGLT APWEPHHQPP PPLRPATSAP APFALAALSE PGLVPQQHYG LHGGMTAAPG  720
VAHQAGGGVA GAGAGGAYAA AAFALAPPQP PQYMMLPPRP VWQHGPRLEV DAIRRARFHA  780
EALM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-195212927104C-Myb DNA-Binding Domain
1msf_C3e-195212927104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156163RRGKRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150G0L40.0A0A150G0L4_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1143523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.27e-22myb domain protein 3r-5