PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ43269.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family NF-YC
Protein Properties Length: 262aa    MW: 26795.2 Da    PI: 4.6155
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ43269.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC132.31.5e-41191099101
       NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
                 q e+ + f + +  l  +  i+k+dedv+misaeaPvl++kace+fileltlrsw+haeenkrrtl+++d+aaa+ +t+ifdfl+divprd++
  KXZ43269.1  19 QAEQLKAFWQSQ--LVEVSEIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWMHAEENKRRTLQRNDVAAAIFKTEIFDFLMDIVPRDDV 109
                 556666666655..57899************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.8E-3233106IPR009072Histone-fold
PfamPF008084.9E-163491IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.68E-2338106IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MADGQGYGGY QGYGGGNHQA EQLKAFWQSQ LVEVSEIMKS DEDVRMISAE APVLFAKACE  60
MFILELTLRS WMHAEENKRR TLQRNDVAAA IFKTEIFDFL MDIVPRDDVK EEGQPAAASA  120
AAAAPPAAAS AAPQAPVPAA SRPPAGLPSH PALGPGGLFF PSPYGLPPGA LGGDPNHAAA  180
AAAAAAMMRP PMPMGVMDPA LMSLYQQQLM AGQAWTHLPG LPPPPTASGA GDGAAGQQGG  240
QGQSAGTPGA AQGQAGDSAS EK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-40311062095NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884RRTLQRN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FMV53e-46NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A150G0920.0A0A150G092_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP21951616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.14e-44nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Qi M, et al.
    QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    Plant Biotechnol. J., 2019. 17(1): p. 252-263
    [PMID:29878511]