PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ42767.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family MYB
Protein Properties Length: 667aa    MW: 73380.2 Da    PI: 6.8901
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ42767.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07432471340
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                       WT+eE  ll +a++++++g   +W+++a+ +  +Rtl+++
       KXZ42767.1 432 EWTEEELRLLDKACTKFPMGtpkRWDAVAAFVR-TRTLEEV 471
                      7********************************.****987 PP
2Myb_DNA-binding27.57.5e-09597645247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      g+W++  ++ lv a kq +++    +W+++++ ++ g+t  qc  r+  +
       KXZ42767.1 597 GAWSEAQELALVAALKQCPKElgaeRWDAVSQLVP-GKTKAQCFKRFKEL 645
                      89*****************99**************.*******9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.4E-2059160IPR001623DnaJ domain
SuperFamilySSF465652.62E-2062138IPR001623DnaJ domain
SMARTSM002711.9E-1666134IPR001623DnaJ domain
PfamPF002263.1E-1867139IPR001623DnaJ domain
PROSITE profilePS5007617.86267142IPR001623DnaJ domain
CDDcd062576.13E-1567131IPR001623DnaJ domain
PRINTSPR006252.2E-590105IPR001623DnaJ domain
PRINTSPR006252.2E-5114134IPR001623DnaJ domain
PROSITE patternPS006360119138IPR018253DnaJ domain, conserved site
PROSITE profilePS512937.986428478IPR017884SANT domain
SMARTSM007171.6E-5429481IPR001005SANT/Myb domain
CDDcd001671.08E-4432471No hitNo description
SuperFamilySSF466891.79E-7432473IPR009057Homeodomain-like
PROSITE profilePS512937.653594650IPR017884SANT domain
SMARTSM007172.4E-6595648IPR001005SANT/Myb domain
SuperFamilySSF466894.93E-7596645IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-5596645IPR009057Homeodomain-like
PfamPF002492.7E-7597645IPR001005SANT/Myb domain
CDDcd001672.75E-5598645No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MALKQAGLWE DPTPPEESSS ADGGAGEPSS ATSAAAAADA DKPPPGVDWK GSKARKRKAV  60
KKKDGADPYS LLGLSNERWT ATEAQIRAAY RRACLEHHPD KALINVTDEA EKERIQEHFK  120
TIQDAYDILS DPAKRREFDS TDEFDDTLPM QCDSKDFFKV FSPAFRRNAR WSSVEPVPDV  180
GDENTPWEQV SKFYDFWYTF KSWREFPHPD EEDVECAESR EHRRWIERNN SKLREKGKKE  240
EGRRLRDFVD AAYKYDPRVL RKKEDDRLER ERKKAEKEEA RRKAQEEEEA RKAAEEEARK  300
AAEEEAKRAT EEARKVREAA KAQLKQLRKR LRTIAEGTGG NRLISEDDVE KLTTKLEPEA  360
MSALVDSLSA CGGPGEELAA AHKGVLLEAL RSIDVKEEEA VRAREAAKKE AELAAKLAAK  420
EEHKRKMAAM REWTEEELRL LDKACTKFPM GTPKRWDAVA AFVRTRTLEE VLLMVKDRQG  480
ASATRMKAQE DWKGAQKKPA EVKSQADTRA QAFTDVEVKL AGEAAAKLIP TKAAAAPPPA  540
VKTASEATSA APSASGSEAA TPAAPASPTA ATAAASAAAP APAAAKAGKK AAAADSGAWS  600
EAQELALVAA LKQCPKELGA ERWDAVSQLV PGKTKAQCFK RFKELREAFR SKKQAGGGDG  660
GADDGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1514925913123Zuotin
5dje_B2e-1514925913123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326332LRKRLRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2897977e-55AY289797.1 Chlamydomonas reinhardtii GlsA-related protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002953749.10.0asymmetric division protein GlsA
TrEMBLA0A150FYV80.0A0A150FYV8_GONPE; Uncharacterized protein
STRINGXP_002953749.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP118489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.18e-73DnaJ domain ;Myb-like DNA-binding domain