PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ42748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | MYB | ||||||||
Protein Properties | Length: 737aa MW: 76162.2 Da PI: 5.4964 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.6 | 2.9e-13 | 80 | 141 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.................tWktIartmgkgRtlkqcksrwqk 46 r +WT+ +++lv+av+ +W+++a+ ++ gRt+kqc++rw++ KXZ42748.1 80 RRPWTQSQHDRLVKAVEAQQRAllaagempdgsdgdgriNWTLVAESVP-GRTGKQCRERWHN 141 679****************966***************************.***********98 PP | |||||||
2 | Myb_DNA-binding | 34.6 | 4.3e-11 | 150 | 192 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg W +eEd ++++++++G W++I+r + +Rt++q+k+rw KXZ42748.1 150 RGQWAEEEDRVIARGHAMWGAA-WTRISRNLE-RRTENQVKNRWS 192 899*******************.*********.***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.17E-6 | 72 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.094 | 75 | 143 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.7E-10 | 79 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-10 | 80 | 141 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.78E-8 | 82 | 141 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-16 | 82 | 152 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.62E-19 | 123 | 197 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.435 | 145 | 199 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-7 | 149 | 197 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-10 | 150 | 192 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.84E-7 | 153 | 191 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-14 | 153 | 196 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MMSTRAGQVY DEDARVWASG VDGLSSAESN PAGRTDQQDD DSESFDMDED EPSLDTGDDE 60 PSARLYGAAG RTTASGGARR RPWTQSQHDR LVKAVEAQQR ALLAAGEMPD GSDGDGRINW 120 TLVAESVPGR TGKQCRERWH NACSRPNAVR GQWAEEEDRV IARGHAMWGA AWTRISRNLE 180 RRTENQVKNR WSTIARAARK QPPRLPSISV AAPPPPAAAT TTTIGSQATT AIETDNRSYS 240 AVTKEPDSGG AATANPSVSG QQAPAPAAPE GVIAFDPTLP LGAFLPPSAS ASPSSPIAAA 300 AEVRCTTTAP ASDSRAPDGE IVRVGSVGSL LSPAGPGPYL TDWHGSQTPL AGASSGSPFT 360 SGGRKRSLGA SRLGLLGSSN PDQPFSATAE AGGSHAQAAP GHILDEQLCA GVDGSPMKRV 420 RSEPTALART DSGFAAHSGG GGGGKGAAGK RLIEAAAEAL SRSASDSVTL PSALVRMLLE 480 LAKQHESLLQ LTRTASHAAA EAGAAATAVA ATAGGYLPQS PLPLSLLQAQ LHPAPYELPW 540 PHPDHTQSLV KGAVNQQPQP QPQPQPQQPG AEYFEALRQA RQRQLMMERA GDLKLALPAG 600 SADNAALQSA GGEGLLGEGV CGHTEHQDPR VRDLMDEVDT CNDDNDWLAN LRIHSFGGMV 660 AQCLRNASDA GASGAGAAGP LVTPPPPPQQ QRQQQQQTVG AAPPPAAAGA AGGPVHTALV 720 SCPTPSEALI QSFLLDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-20 | 82 | 196 | 9 | 106 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150FYT7 | 0.0 | A0A150FYT7_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP14741 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25230.1 | 1e-20 | myb domain protein 100 |