PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ42538.1
Organism
Gonium pectorale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family ARR-B
Protein Properties Length: 604aa    MW: 61992.5 Da    PI: 5.5088
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ42538.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like889e-28213266155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++W+ e+H++Fv+av+ L G++kA+Pk+ile+m+v+gLt+e+v+SHLQkYRl
  KXZ42538.1 213 KARVVWSVEMHQQFVNAVNTL-GIDKAVPKKILEIMNVEGLTRENVASHLQKYRL 266
                 68*******************.********************************8 PP
2Response_reg81.92e-27131211109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+pl +++++q+l++  y ev++++++++al+ll+ek   +Dl+l D+ mp+mdG++ll+     e++lp+i+++++g+ + +l+ +  Ga 
    KXZ42538.1  13 VLVVDDDPLCLKVVEQMLRRCSY-EVTTCTNASSALHLLREKVseYDLVLSDVYMPDMDGFKLLEVVGL-EMDLPVIMMSSNGDTSNVLRGVTHGAC 107
                   89*********************.***************888888*******************98855.458************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+  eel++
    KXZ42538.1 108 DYLIKPVRLEELRN 121
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004485.4E-3211123IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521723.56E-3711135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-4311148No hitNo description
PROSITE profilePS5011042.93912127IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-2413121IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.62E-3014126No hitNo description
PROSITE profilePS5129410.275210269IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-29211271IPR009057Homeodomain-like
SuperFamilySSF466896.81E-19212270IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-24213266IPR006447Myb domain, plants
PfamPF002492.0E-5215265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDKAISSITA ISVLVVDDDP LCLKVVEQML RRCSYEVTTC TNASSALHLL REKVSEYDLV  60
LSDVYMPDMD GFKLLEVVGL EMDLPVIMMS SNGDTSNVLR GVTHGACDYL IKPVRLEELR  120
NLWQHVVRRR RQHAQDLDSD EQSQERDDDP GRNKRKMEVA GLTPDQFRAN GSTLLNGAAS  180
GALALGGSGS VGPGGLPGAD ELGLGADGGS NKKARVVWSV EMHQQFVNAV NTLGIDKAVP  240
KKILEIMNVE GLTRENVASH LQKYRLYLKR VSGVQPSGQQ RSSSKPAQAQ QPQQAQQQTP  300
PTPPLTHAPS GPGGAPSIGA GAQGNTGTAP QQNTGPSSGG LGPAPLATGG GSGPGMAAGM  360
GPLSGLAMNG MMPPLPGVMP GPGSLFPQVP PPHQMQADQH QMHQQHQAGM VGMQPHSSSL  420
QQQQKAAMGA GQLNPPGGPL QHQSPLPQNG TPHGGQNLPA AGAHSGNATP QPPLMGPEGM  480
NGVGAGSLHT NQHSNGASGG MADLPAELLG GLMMEDGFGG PGAGPTATSA PQLDPAMLLD  540
GDDNADIAAV FSDMYNSGGG GPAGSAGAGP GLLGTAATDG ALLSGTDGGR GVTDEDFFSF  600
LLKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21210272264ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150FY700.0A0A150FY70_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP12201516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.16e-48response regulator 11