PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ42126.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | MYB | ||||||||
Protein Properties | Length: 774aa MW: 81758.7 Da PI: 4.7319 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 36 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd+ l ++v G +W+tIa+ + gR++k+c++rw ++l KXZ42126.1 36 RGPWTPEEDKMLTNLVLTCGAQRWSTIAESIE-GRSGKSCRLRWWNHL 82 89******************************.***********8886 PP | |||||||
2 | Myb_DNA-binding | 41.7 | 2.7e-13 | 88 | 132 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++++ Ed +v+ ++++G++ W+ Ia+ ++ gRt++ +k+rw++ KXZ42126.1 88 KGPFSEFEDAVIVRSHEKYGNK-WSVIAKLLP-GRTDNAVKNRWNST 132 799*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.445 | 31 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-29 | 35 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 35 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 36 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-24 | 37 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.09E-12 | 38 | 82 | No hit | No description |
PROSITE profile | PS51294 | 23.815 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 9.3E-14 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-12 | 88 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 90 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.68E-10 | 90 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 774 aa Download sequence Send to blast |
MKSRKANAGR RPALKRSSSF TEDEELEQHD PHGDKRGPWT PEEDKMLTNL VLTCGAQRWS 60 TIAESIEGRS GKSCRLRWWN HLSPQVKKGP FSEFEDAVIV RSHEKYGNKW SVIAKLLPGR 120 TDNAVKNRWN STLKRKHTGG TLNNRFVDTY PELDGLMADP EAAREAAEYS SCLDSYSACA 180 PSSLSAGNGG MWTGSGSEEG DDHEHDEPQQ GHEAEERQLW RGEEPANGGE DAAAAAAPPA 240 PHTHTHNTRR ATSQRLAAAS QRTQPQPQPR AQPTASELQG ENETDAELRT HHHHQASTSR 300 CLSPSQTAAA ARAAAADCMQ QESDLQEEDD NDREELQFRQ LPGQASGMWD PQPPACVVGA 360 DLSDALPAWA ASSAPCELES DLQQLQTACD ASTLTACGLP PLKRARHSPQ QPSPSSPPQQ 420 PSLPAACSFL MPAARPPTSA AAEHDGAACG SSGEGLLDLA SDSASGSGGV AAMPMLICSG 480 SGCSTSGTLP ALPQPAAAFG LGYAAQGCSG GACVQGMAPL PALLDPPEDL EFQTFMDSLD 540 STLDSSLAAP EMFDADEDWA DVVLLEQQQQ QQQQQQLQQA QQQFQLQQQS PQQPCPALPP 600 ALPQQPSNTC GSGLVGVWSL ALQSAPLPVP VQPSLLATGA PLTLHVGLGK WAAPVGACAA 660 SAPAPTPASS WKQRALHQLG VAQPLGAPAP SSSMPWAVQD GARSCLSGPG GCPGGSTAPH 720 WLSPQLQSQQ LQLPTMMPQT VPMLLQQPCY ASVYDMGRGL ACGGAFADPQ AFFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 4e-37 | 36 | 136 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-37 | 36 | 136 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150FWZ7 | 0.0 | A0A150FWZ7_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 6e-39 | myb domain protein r1 |