PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ41805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | C3H | ||||||||
Protein Properties | Length: 451aa MW: 46506.7 Da PI: 8.589 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3e-06 | 32 | 51 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +f + G C++Gd+Ck++H+ KXZ41805.1 32 CFDFTK-GVCSRGDKCKYSHD 51 667888.*************7 PP | |||||||
2 | zf-CCCH | 20.4 | 9.1e-07 | 110 | 131 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f + G C++G+ C+++H+ KXZ41805.1 110 AICYDFVK-GVCQRGAECRYSHD 131 58******.*************7 PP | |||||||
3 | zf-CCCH | 23.8 | 8e-08 | 150 | 171 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +++r G C++G++Ck++H KXZ41805.1 150 EVCYDYLR-GRCNRGATCKYSHN 171 78******.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.535 | 26 | 53 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 26 | 52 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 27 | 51 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 28 | 51 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.103 | 60 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.28 | 61 | 86 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.408 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.79E-5 | 107 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 107 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 110 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.558 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 147 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-5 | 147 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-5 | 150 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 150 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MDTYPGGVAP RPGQNDAARQ ASIAQEGKAQ ICFDFTKGVC SRGDKCKYSH DLATIVHFNS 60 KEKGICFDYL RNQCHRGLLC RFSHDLSNIA QQCQVYNNGS KENKGTKPNA ICYDFVKGVC 120 QRGAECRYSH DLSLIARMAR GGSAQPKAGE VCYDYLRGRC NRGATCKYSH NIAFLAAPGF 180 LGSAMNSDGT PMAAQAPGAG MPGAAGPLGG MPLGAAPGFM GMGGLQSMNP RLAPALSADQ 240 ATLNHVLAAA GPGAVNQMLA AQAAMQQSSG LAEAAAAAAE GRRRSASLTG ELVNDTLLVN 300 DQPSSNWQGV SGGQAKALAV AQQAALMQNY AAQQRMARAA AANMHAFGPM AQMQGPGHGP 360 DATGAEGLMN QAAGGMNPGL FGKHPGMGQF NGLPDTGARG MGRPPLPPGA MPMELASFLS 420 GGLAENPIFA ETLAAAAKAQ AQAQSQVPYM A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002946451.1 | 0.0 | hypothetical protein VOLCADRAFT_86752, partial | ||||
TrEMBL | A0A150FX70 | 0.0 | A0A150FX70_GONPE; Uncharacterized protein | ||||
STRING | XP_002946451.1 | 0.0 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3507 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 4e-06 | C3H family protein |