PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KXZ41683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
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Family | SBP | ||||||||
Protein Properties | Length: 1218aa MW: 122038 Da PI: 6.7913 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 112.9 | 1.8e-35 | 726 | 802 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C+v++C++dl+++keyh+r+++C++h ka+vv+ +g+ qrfCqqC+rfh lsefD +krsCr rL +hn+rrrk++ KXZ41683.1 726 MCHVDDCQVDLASLKEYHQRFRICDFHLKAEVVMREGIPQRFCQQCGRFHVLSEFDGAKRSCRARLMRHNARRRKRA 802 6*************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.710.10 | 1.0E-9 | 11 | 92 | No hit | No description |
Pfam | PF00651 | 2.9E-8 | 12 | 91 | IPR000210 | BTB/POZ domain |
SuperFamily | SSF54695 | 1.73E-7 | 12 | 91 | IPR011333 | SKP1/BTB/POZ domain |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-30 | 721 | 788 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 28.06 | 724 | 801 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-31 | 725 | 802 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.1E-30 | 727 | 800 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1218 aa Download sequence Send to blast |
MNTPVEAALA AAVVLASCSR KFASVLAQGD ATGKELPIQG VDSEALESVV RFFYCGECLL 60 STATVVPIHD VCLKLEVPGL GAGCEAYVQQ SLNPATCMTY LGAAVRLLLE PTIKLCLSYA 120 TSRFEDVIAA PGFQSLSPEA VRLLLTHMRG GASDISLARA LARWAVRKPE HLPDCEAMFQ 180 ELNITATALL QLLQLPDFVQ ALQHGPGLGG RLGPAGEAAA AAAALGPLER LLGGAAAGGL 240 LPAADAGALL HFIEGNDRPG SNPRALALLL QQHQQQHQQQ PSSSGSGAAP DGNSPLEDGP 300 GQTSPRHPER TDSGSRGGIA RLVRAAEALG RAGGSSSRSA GAWADRDDAG QEPWEGAEPR 360 RRALLTAGSA TLAEEQPGRA AGRAGGALET GGDGLVAVRL AALEDAGLTL NLLPTGALVA 420 SGGPLGKQQL PLQLAPSGSG PNAPLLALLP ASVLLDLQDA RVAPGREQRA LEGLPGEAPG 480 QRPLLPPRTA SVTGGGREAA EGDQGSGEGF PDDSPPPPPL PPQQQQLGAA VQQLHGLLPP 540 RFATTGKPTS ASAGSLPPPS AAAAAAASLA VPPSAAQRSA SLPRASGQLG SQGAPLSAPG 600 GIGGGGGGAA GLPLSLLPAS ASDRSPTRWT KATSGPASAA SLPLGGSGVL LALPTPRSPH 660 LDGASAPGGS SAGGGGGGGP KRRRVSPDED DPDHVEDGGN ARGGRFGRGP GQGSGTPAAG 720 GKAPLMCHVD DCQVDLASLK EYHQRFRICD FHLKAEVVMR EGIPQRFCQQ CGRFHVLSEF 780 DGAKRSCRAR LMRHNARRRK RADAKEASVD YLLDEPRKLS RSTSGHTSSS APRAAAPQLP 840 LLQPLPPQQP PPPPLAPPNQ LFLQPLPDQP SSLYLPLQQM LFPPDAEGQP IVPGSGGGGG 900 SATGLPPPLQ PPLAAREAAA ATAGGGGSGG GVPSAPLLRL QQQLELQQDL LLRQRGRETQ 960 QQPQQRLERA PSQQQVPQQQ RPRLAAAAAP GGGELRAGDG VLEALLGLNH AGGGSAPPPA 1020 SERQAEAAAA AAVLSLRATV RHYGPTTAAA AASAAVANGG GSEAEPGSQR EQVPPNQPTH 1080 GSVSQAAPPE LSQLRTAGVQ LAAAAAATVT GKGAKGEGPL GPAATGEASP SRGPEAKPED 1140 AGHRAGAPQP GAMPGQRPAE DAPAPKLAEP SPAAGEAGAP GGASDGAGDG GEAGRAGAAA 1200 APGDGSPGVG GGAQQSRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-25 | 718 | 800 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 680 | 684 | KRRRV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150FVP1 | 0.0 | A0A150FVP1_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 8e-21 | squamosa promoter binding protein-like 3 |