PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KXZ41683.1

Organism

Gonium pectorale

Taxonomic ID

33097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium

Family

SBP

Protein Properties

Length: 1218aa MW: 122038 Da PI: 6.7913

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KXZ41683.1	genome	GPGRP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	112.9	1.8e-35	726	802	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C+v++C++dl+++keyh+r+++C++h ka+vv+ +g+ qrfCqqC+rfh lsefD +krsCr rL +hn+rrrk++ KXZ41683.1 726 MCHVDDCQVDLASLKEYHQRFRICDFHLKAEVVMREGIPQRFCQQCGRFHVLSEFDGAKRSCRARLMRHNARRRKRA 802 6*************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.710.10	1.0E-9	11	92	No hit	No description
Pfam	PF00651	2.9E-8	12	91	IPR000210	BTB/POZ domain
SuperFamily	SSF54695	1.73E-7	12	91	IPR011333	SKP1/BTB/POZ domain
Gene3D	G3DSA:4.10.1100.10	1.4E-30	721	788	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	28.06	724	801	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-31	725	802	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.1E-30	727	800	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1218 aa Download sequence Send to blast
MNTPVEAALA AAVVLASCSR KFASVLAQGD ATGKELPIQG VDSEALESVV RFFYCGECLL 60 STATVVPIHD VCLKLEVPGL GAGCEAYVQQ SLNPATCMTY LGAAVRLLLE PTIKLCLSYA 120 TSRFEDVIAA PGFQSLSPEA VRLLLTHMRG GASDISLARA LARWAVRKPE HLPDCEAMFQ 180 ELNITATALL QLLQLPDFVQ ALQHGPGLGG RLGPAGEAAA AAAALGPLER LLGGAAAGGL 240 LPAADAGALL HFIEGNDRPG SNPRALALLL QQHQQQHQQQ PSSSGSGAAP DGNSPLEDGP 300 GQTSPRHPER TDSGSRGGIA RLVRAAEALG RAGGSSSRSA GAWADRDDAG QEPWEGAEPR 360 RRALLTAGSA TLAEEQPGRA AGRAGGALET GGDGLVAVRL AALEDAGLTL NLLPTGALVA 420 SGGPLGKQQL PLQLAPSGSG PNAPLLALLP ASVLLDLQDA RVAPGREQRA LEGLPGEAPG 480 QRPLLPPRTA SVTGGGREAA EGDQGSGEGF PDDSPPPPPL PPQQQQLGAA VQQLHGLLPP 540 RFATTGKPTS ASAGSLPPPS AAAAAAASLA VPPSAAQRSA SLPRASGQLG SQGAPLSAPG 600 GIGGGGGGAA GLPLSLLPAS ASDRSPTRWT KATSGPASAA SLPLGGSGVL LALPTPRSPH 660 LDGASAPGGS SAGGGGGGGP KRRRVSPDED DPDHVEDGGN ARGGRFGRGP GQGSGTPAAG 720 GKAPLMCHVD DCQVDLASLK EYHQRFRICD FHLKAEVVMR EGIPQRFCQQ CGRFHVLSEF 780 DGAKRSCRAR LMRHNARRRK RADAKEASVD YLLDEPRKLS RSTSGHTSSS APRAAAPQLP 840 LLQPLPPQQP PPPPLAPPNQ LFLQPLPDQP SSLYLPLQQM LFPPDAEGQP IVPGSGGGGG 900 SATGLPPPLQ PPLAAREAAA ATAGGGGSGG GVPSAPLLRL QQQLELQQDL LLRQRGRETQ 960 QQPQQRLERA PSQQQVPQQQ RPRLAAAAAP GGGELRAGDG VLEALLGLNH AGGGSAPPPA 1020 SERQAEAAAA AAVLSLRATV RHYGPTTAAA AASAAVANGG GSEAEPGSQR EQVPPNQPTH 1080 GSVSQAAPPE LSQLRTAGVQ LAAAAAATVT GKGAKGEGPL GPAATGEASP SRGPEAKPED 1140 AGHRAGAPQP GAMPGQRPAE DAPAPKLAEP SPAAGEAGAP GGASDGAGDG GEAGRAGAAA 1200 APGDGSPGVG GGAQQSRE

Sequence ? help Back to Top

Protein Sequence Length: 1218 aa Download sequence Send to blast

MNTPVEAALA AAVVLASCSR KFASVLAQGD ATGKELPIQG VDSEALESVV RFFYCGECLL  60
STATVVPIHD VCLKLEVPGL GAGCEAYVQQ SLNPATCMTY LGAAVRLLLE PTIKLCLSYA  120
TSRFEDVIAA PGFQSLSPEA VRLLLTHMRG GASDISLARA LARWAVRKPE HLPDCEAMFQ  180
ELNITATALL QLLQLPDFVQ ALQHGPGLGG RLGPAGEAAA AAAALGPLER LLGGAAAGGL  240
LPAADAGALL HFIEGNDRPG SNPRALALLL QQHQQQHQQQ PSSSGSGAAP DGNSPLEDGP  300
GQTSPRHPER TDSGSRGGIA RLVRAAEALG RAGGSSSRSA GAWADRDDAG QEPWEGAEPR  360
RRALLTAGSA TLAEEQPGRA AGRAGGALET GGDGLVAVRL AALEDAGLTL NLLPTGALVA  420
SGGPLGKQQL PLQLAPSGSG PNAPLLALLP ASVLLDLQDA RVAPGREQRA LEGLPGEAPG  480
QRPLLPPRTA SVTGGGREAA EGDQGSGEGF PDDSPPPPPL PPQQQQLGAA VQQLHGLLPP  540
RFATTGKPTS ASAGSLPPPS AAAAAAASLA VPPSAAQRSA SLPRASGQLG SQGAPLSAPG  600
GIGGGGGGAA GLPLSLLPAS ASDRSPTRWT KATSGPASAA SLPLGGSGVL LALPTPRSPH  660
LDGASAPGGS SAGGGGGGGP KRRRVSPDED DPDHVEDGGN ARGGRFGRGP GQGSGTPAAG  720
GKAPLMCHVD DCQVDLASLK EYHQRFRICD FHLKAEVVMR EGIPQRFCQQ CGRFHVLSEF  780
DGAKRSCRAR LMRHNARRRK RADAKEASVD YLLDEPRKLS RSTSGHTSSS APRAAAPQLP  840
LLQPLPPQQP PPPPLAPPNQ LFLQPLPDQP SSLYLPLQQM LFPPDAEGQP IVPGSGGGGG  900
SATGLPPPLQ PPLAAREAAA ATAGGGGSGG GVPSAPLLRL QQQLELQQDL LLRQRGRETQ  960
QQPQQRLERA PSQQQVPQQQ RPRLAAAAAP GGGELRAGDG VLEALLGLNH AGGGSAPPPA  1020
SERQAEAAAA AAVLSLRATV RHYGPTTAAA AASAAVANGG GSEAEPGSQR EQVPPNQPTH  1080
GSVSQAAPPE LSQLRTAGVQ LAAAAAATVT GKGAKGEGPL GPAATGEASP SRGPEAKPED  1140
AGHRAGAPQP GAMPGQRPAE DAPAPKLAEP SPAAGEAGAP GGASDGAGDG GEAGRAGAAA  1200
APGDGSPGVG GGAQQSRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-25	718	800	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	680	684	KRRRV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00634	PBM	Transfer from PK22320.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A150FVP1	0.0	A0A150FVP1_GONPE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	8e-21	squamosa promoter binding protein-like 3