PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KXZ41543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 234aa MW: 22866.1 Da PI: 9.8605 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 53.7 | 4.2e-17 | 157 | 205 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ + l+ +lpik++A+e gv+l+ K++CR +G +RWP+Rk++sl KXZ41543.1 157 TLTKQALRPRLHLPIKEVASEFGVSLSFFKKQCRALGFRRWPSRKLSSL 205 688999****************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.789 | 137 | 225 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.9E-15 | 157 | 205 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MGCGGGEGEA GGGLANRGGG GGTGVQQDWE MGCGDAEDEA DGGVAADSSR LGLGANDAST 60 SAPAVALPPP PPPPAAGRKT SRRPKAAAPD NSDGGDVDAN WASDGDSGDD GGSNGSTAAA 120 AAAPAATAAR KRGSAASKAA DGGAGGAPRG ARRPQLTLTK QALRPRLHLP IKEVASEFGV 180 SLSFFKKQCR ALGFRRWPSR KLSSLARVRK ALEGDGGGGG GEAAQKALGS ARVN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A150FV96 | 1e-157 | A0A150FV96_GONPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP6094 | 2 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18790.1 | 4e-10 | RWP-RK domain-containing protein |