PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U028700.1.p
Common NameGLYMA_U028700, LOC100807080
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 595aa    MW: 64900.6 Da    PI: 7.0096
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U028700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-24224268145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  Glyma.U028700.1.p 224 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 268
                        79****************************************985 PP
2QLQ62.11.5e-21154190137
                QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        ++FT++Q+++L++Q+l+yKy+ an+PvP +Ll +i+k
  Glyma.U028700.1.p 154 GPFTPSQWMELEHQALIYKYITANMPVPTHLLIPIRK 190
                        59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-12154190IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.3E-16155189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.611155190IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847224268IPR014977WRC domain
PfamPF088791.2E-20225267IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDLGVVGLEG VVGSESGCVF GSSLASDPET KHKWYGSGVL KQERSAIASE DDEWGTYKVA  60
KIDHDMSSAP KAMIFQQRNN SLLRSNNATL FSDGHHQSQM LSFSSPKSET LLVDTASSNA  120
TLPFSYHQLS SYSRNTGYSS GSISMHGALA GVRGPFTPSQ WMELEHQALI YKYITANMPV  180
PTHLLIPIRK ALDSVGFCNF STGLLRSNSL GWGGFHLGFS NSTDPEPGRC RRTDGKKWRC  240
SRDAVVDQKY CERHMNRGRH RSRKPVEGQS GHALTTTTTT TNTLNASSNS TVVPGNNTFA  300
HNKVHHPLPP NSSPANTINR MFMNNKENNS TSERMEDCSA LPMLPPTLEL KPKEKNNFMI  360
HKHQDPYDES SRNNNEFGLV TSDSLLNPTQ KRSFDSSSSQ KDDSESQQQH SLRHFIDDSP  420
KPPSHNHHRS SSIWPELDNI QSDRTQLSIS IPISSSDFMS FTTSSPSNEK LTLSPLRLSR  480
ALDPIQMGLG VGSGASNEAN PRQANWIPIT WESSMGGPLG EVLNLSNNSN ASDQCGKNNT  540
SALNLMKDDD DDGWDNSPPL GSSPTGVLQK TAFGSLSNSS AGSSPRGAPE NNKE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.326920.0cotyledon| flower| hypocotyl| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U028700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595999.10.0growth-regulating factor 1
RefseqXP_028201309.10.0growth-regulating factor 1-like
TrEMBLA0A445H3S10.0A0A445H3S1_GLYSO; Growth-regulating factor 1 isoform B
TrEMBLI1M8W00.0I1M8W0_SOYBN; Uncharacterized protein
STRINGGLYMA14G10090.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Representative plantOGRP33571226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-91growth-regulating factor 1