PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U028600.1.p
Common NameGLYMA_U028600, LOC100807610
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 600aa    MW: 65601.5 Da    PI: 7.6291
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U028600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-24223267145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  Glyma.U028600.1.p 223 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 267
                        79****************************************985 PP
2QLQ54.82.9e-19154185132
                QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 
                        ++FT++Q+++L++Q+l+yKy+ +n+PvP +L+
  Glyma.U028600.1.p 154 GPFTPSQWMELEHQALIYKYITSNVPVPTHLI 185
                        59****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-8154190IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.2E-14155185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.342155190IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847223267IPR014977WRC domain
PfamPF088791.2E-20224266IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MDLGVVGLEG VVGSESCCVF GSSLASDPET KHKWYGSGVL KQERSAIASE DDEWRTSKVA  60
KTDHDMSSAS KAMLFQQRNN SLLRSNATLF SDGHHHQSQM LSFSSPKSES LLVDKASSNA  120
TLPFSYHQLS SNTRNAGYSS GSISMHGALA GVRGPFTPSQ WMELEHQALI YKYITSNVPV  180
PTHLIPIRKA LDSLGFCNFS TGLLRPNALG WGGFHLGFSN NTDPEPGRCR RTDGKKWRCS  240
RDAVVDQKYC ERHMNRGRHR SRKPVEGQLG HALTTTTTTN TPNASSNSTV VPRNTTTTTT  300
FAHNNVHHPL PPHSSQANTI NRMFTSNKEN NSTSERLQDP ALPMLPPTLE LKPKENNPFM  360
IHKHHIPADE YSRNSNEFGL VTSDSLLNPT QKRSFTSSQK DDSESQQQHS LRHFIDDSPK  420
PQSHNHHHHH HSSSIWPELD SMQSDRTQLS ISIPISSSDF MSFTTSSPSN EKLTLSPLGH  480
SRELDPIQME LGMGSGASNE ANTRQANWIP ITWESSMGGP LGEVLNLSNN SNASDQCGKN  540
NNTSALNLMK DGWDNNPPLG SSPTGVLQKS AFGSLSNSSA GSSPRAENNK EGATLCNAL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.350500.0pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U028600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628641.10.0growth-regulating factor 1
RefseqXP_028201308.10.0growth-regulating factor 1-like
TrEMBLA0A445H3P40.0A0A445H3P4_GLYSO; Growth-regulating factor 1 isoform A
TrEMBLK7M5R80.0K7M5R8_SOYBN; Uncharacterized protein
STRINGGLYMA14G10100.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Representative plantOGRP33571226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.18e-89growth-regulating factor 1