PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.U019800.3.p | ||||||||
Common Name | GLYMA_U019800, LOC100816621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 792aa MW: 88078.4 Da PI: 6.3507 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 3e-23 | 165 | 266 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++ +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + Glyma.U019800.3.p 165 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHDVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--R 253 99****************************963.3445679************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++el+++++r+ Glyma.U019800.3.p 254 GENGELRLGIRRA 266 499999****996 PP | |||||||
2 | Auxin_resp | 117.9 | 8.2e-39 | 291 | 373 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks F+v+Y+Pras+++Fvv+++k++k++k++vs+G+Rfkm+fe+++s+err+ sG+ +g+sdldp+rWp+SkWr+L Glyma.U019800.3.p 291 VANAISTKSKFHVFYSPRASQADFVVPYQKYVKSIKNPVSIGTRFKMRFEMDESQERRCcSGMLIGTSDLDPYRWPKSKWRCL 373 689********************************************************9**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.8E-41 | 156 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.28E-44 | 157 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.27E-22 | 163 | 265 | No hit | No description |
PROSITE profile | PS50863 | 12.492 | 165 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-21 | 165 | 266 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-23 | 165 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.9E-33 | 291 | 373 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.0E-7 | 655 | 747 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 21.836 | 663 | 747 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 6.21E-10 | 666 | 742 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MEIDLNHEVT EVEKNAFCDR ECEKGVGVTC WSSSTCSSST SSSSALVSSS YLELWHACAG 60 PLTSLPKKGN VVVYFPQGHL EQVASFSPFT PLEIPTYDLQ PQIFCRVVNV QLLANKENDE 120 VYTQVTLLPQ AELEGMYLEG KELEELGAEE EGDDRSPTKS TPHMFCKTLT ASDTSTHGGF 180 SVPRRAAEDC FPPLDYKQQR PSQELVAKDL HDVEWKFRHI YRGQPRRHLL TTGWSIFVSQ 240 KNLVSGDAVL FLRGENGELR LGIRRAVRPR NDLPESVIGS QNCYPNVLSS VANAISTKSK 300 FHVFYSPRAS QADFVVPYQK YVKSIKNPVS IGTRFKMRFE MDESQERRCC SGMLIGTSDL 360 DPYRWPKSKW RCLMVRWDED IETNHKDRVS PWEIDPSAPL PPLSIQSSPR LKKLRTGLQV 420 ASPSHLITAR GRGLIDFEES VRSPKVLQGQ ENAGFGSLYY GCDTVTKPPG FEMSSQSHPN 480 LGSAEVRKIT SSELSSVHPF SYAGFVETNR FPRVLQGQEI CPLKSLTGKV DMNLGAWGMP 540 NLSCTTFNLH QATKPSFQLS LFPYGDIHQA SQASLFCSKS TTFQRENVPF NKPSTQAGII 600 VNEVGRSDLP NDHKLQGNNI SAAGNMGVSI DNNVQGKVNA CKLFGFSLSG ETTTQNLQNS 660 AKRSCTKVHK QGSLVGRAID LSRLSGYNDL LSELERLFSM EGLLKDPDKG WKILYTDSEN 720 DIMVVGDDPW HEFCDVVSKI HIYTQEEVEK MTIEMISDDT HSCLEEAPVI MEASKSSSVG 780 QPDYSPTAVR V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-120 | 53 | 396 | 22 | 354 | Auxin response factor 1 |
4ldw_A | 1e-120 | 53 | 396 | 22 | 354 | Auxin response factor 1 |
4ldw_B | 1e-120 | 53 | 396 | 22 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.U019800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539110.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Refseq | XP_028191727.1 | 0.0 | auxin response factor 4-like isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A445I1R8 | 0.0 | A0A445I1R8_GLYSO; Auxin response factor | ||||
STRING | GLYMA11G15910.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.U019800.3.p |
Entrez Gene | 100816621 |