PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U014700.1.p
Common NameGLYMA_U014700, LOC100787929
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 466aa    MW: 49980.6 Da    PI: 8.4796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U014700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15281326555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Glyma.U014700.1.p 281 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 326
                        9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-18274338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-13281326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-18281334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-17281330No hitNo description
SMARTSM003532.2E-18282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSQCVPSWDV EDNPPPSRVS LRSNSNSTAP DVPMLDYEVA ELTWENGQLS MHGLGLPRVP  60
VKPPTAATNK YTWEKPRGSG TLESIVNQAT SFSHQEKPRP LNGDSGGGGG VYGNFMVPWF  120
DPHAAATTTT TTTNTMTMDA LVPCSNREQG KKKGMESGPG TCMVGCSTRV GSCCGGKGAK  180
GHEASGRDQS VSGSATFGRD SKHVTLDTCD REFGVAFTST SINSLENTSY AKHCTKTTTI  240
EEHDSVSHSK PMGEDGDEEK KKRANGKSSV STKRSRAAAI HNQSERKRRD KINQRMKTLQ  300
KLVPNSSKTD KASMLDEVIE YLKQLQAQVQ MMNRINMSSM MLPLTMQQQL QMSMMSPMGM  360
GLGMGMGMGM GMGMDMNSMN RANIPGIPPV LHPSAFMPMA ASWDAAVAAA AGGGDRLQGT  420
PASVMPDPLS TIFGCQSQPM TMDAYSRLAA MYQQLHQPPT SGSKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289ERKRRD
2285290RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.327440.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U014700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350520.0AC235052.1 Glycine max strain Williams 82 clone GM_WBb0119P14, complete sequence.
GenBankAC2352520.0AC235252.1 Glycine max strain Williams 82 clone GM_WBb0036F08, complete sequence.
GenBankAC2352730.0AC235273.1 Glycine max strain Williams 82 clone GM_WBb0046P21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006591039.10.0transcription factor UNE10
SwissprotQ8GZ381e-105UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A445I2L10.0A0A445I2L1_GLYSO; Transcription factor UNE10
STRINGGLYMA11G17120.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Representative plantOGRP80031014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]